Legends of figures (GxE paper)
Figure 1: Clustering environments according to seven environmental covariates, measured during the vegetative and flowering stage.
Figure 2: Pearson’s correlation between mean and plasticity parameters.
Figure 3: Representation of plasticity QTLs along the genome. Numbers above the square represent the different chromosomes and the colors distinguished the different traits. The x-axis represents the physical distances in mega base pair (Mbp).
Figure 4: Number of QTLs identified specifically on mean, plasticity or QEI and QTLs that were common to at least two of them.
Figure 5: Physical positions of the MAGIC-MET QTLs for fruit weight and flowering time. The following circle with black bars represents the different domestication/ improvement sweep regions identified in (Zhu et al. 2018). The other circles plot the CI of QTLs identified on mean (green), plasticity (orange) or with QEI analysis (purple).
Figure 6: Correlation of the estimated allelic effect for consistent QTLs between mean and plasticity phenotypes.