References
Ariño, A.H., Chavan, V. and Otegui, J., 2016. Best practice guide for
data gap analysis for biodiversity stakeholders. GBIF Secretariat,
Copenhagen, Denmark .
Bates, D.M., 2010. lme4: Mixed-effects modeling with
R [online]
Broughan, J.M., Judge, J., Ely, E., Delahay, R.J., Wilson, G.,
Clifton-Hadley, R.S., Goodchild, A.V., Bishop, H., Parry, J.E. and
Downs, S.H., 2016. A review of risk factors for bovine tuberculosis
infection in cattle in the UK and Ireland. Epidemiology &
Infection , 144 (14), pp.2899-2926.
Bühler, M.M., Sebald, C., Rechid, D., Baier, E., Michalski, A.,
Rothstein, B., Nübel, K., Metzner, M., Schwieger, V., Harrs, J.A. and
Jacob, D., 2021. Application of copernicus data for climate-relevant
urban planning using the example of water, heat, and
vegetation. Remote sensing , 13 (18), p.3634.
Caughlan, L. and Oakley, K.L., 2001. Cost considerations for long-term
ecological monitoring. Ecological indicators , 1 (2),
pp.123-134.
Chivers, W.J., Gladstone, W., Herbert, R.D. and Fuller, M.M., 2014.
Predator–prey systems depend on a prey refuge. Journal of
theoretical biology , 360 , pp.271-278.
Crevier, L.P., Salkeld, J.H., Marley, J. and Parrott, L., 2021. Making
the best possible choice: Using agent-based modelling to inform wildlife
management in small communities. Ecological
Modelling , 446 , p.109505.
Crouse, K.N., Desai, N.P., Cassidy, K.A., Stahler, E.E., Lehman, C.L.
and Wilson, M.L., 2022. Larger territories reduce mortality risk for
chimpanzees, wolves, and agents: Multiple lines of evidence in a model
validation framework. Ecological Modelling , 471 ,
p.110063.
DeAngelis, D.L. and Diaz, S.G., 2019. Decision-making in agent-based
modeling: A current review and future prospectus. Frontiers in
Ecology and Evolution , 6 , p.237.
Decker, D.J., Riley, S.J. and Siemer, W.F. eds., 2012. Human
dimensions of wildlife management . JHU Press.
Dressel, S., Ericsson, G. and Sandström, C., 2018. Mapping
social-ecological systems to understand the challenges underlying
wildlife management. Environmental Science & Policy , 84 ,
pp.105-112.
Ferrari, G., Delucchi, L., Tagliapietra, V., Urbano, F., Devineau, O.
and Cagnacci, F., 2022. EuroSmallMammals: A network for collaborative
science in small mammal ecology. Hystrix , 33 (suppl.),
p.76.
Fuller, A.K., Decker, D.J., Schiavone, M.V. and Forstchen, A.B., 2020.
Ratcheting up rigor in wildlife management decision
making. Wildlife Society Bulletin , 44 (1), pp.29-41.
Göttert, T. and Starik, N., 2022. Human–wildlife conflicts across
landscapes—General applicability vs. case
specificity. Diversity , 14 (5), p.380.
Gritter, K., Dobbin, M., Merrill, E. and Lewis, M., 2024. An
individual-based movement model for contacts between mule deer
(Odocoileus hemionus). Ecological Complexity , 58 ,
p.101082.
Hebblewhite, M. and Haydon, D.T., 2010. Distinguishing technology from
biology: a critical review of the use of GPS telemetry data in
ecology. Philosophical Transactions of the Royal Society B:
Biological Sciences , 365 (1550), pp.2303-2312.
Hegwood, M., Langendorf, R.E. and Burgess, M.G., 2022. Why win–wins are
rare in complex environmental management. Nature
Sustainability , 5 (8), pp.674-680.
Hijmans, R.J., Van Etten, J., Cheng, J., Mattiuzzi, M., Sumner, M.,
Greenberg, J.A., Lamigueiro, O.P., Bevan, A., Racine, E.B., Shortridge,
A. and Hijmans, M.R.J., 2015. Package ‘raster’. R
package , 734 , p.473.
Hijmans, R.J., Bivand, R., Forner, K., Ooms, J., Pebesma, E. and Sumner,
M.D., 2022. Package ‘terra’. Maintainer: Vienna, Austria .
Hopkins, S.R., Sokolow, S.H., Buck, J.C., De Leo, G.A., Jones, I.J.,
Kwong, L.H., LeBoa, C., Lund, A.J., MacDonald, A.J., Nova, N. and Olson,
S.H., 2021. How to identify win–win interventions that benefit human
health and conservation. Nature Sustainability , 4 (4),
pp.298-304.
Kane, A., Healy, K., Ruxton, G.D. and Jackson, A.L., 2016. Body size as
a driver of scavenging in theropod dinosaurs. The American
Naturalist , 187 (6), pp.706-716.
Kays, R., Davidson, S.C., Berger, M., Bohrer, G., Fiedler, W., Flack,
A., Hirt, J., Hahn, C., Gauggel, D., Russell, B. and Kölzsch, A., 2022.
The Movebank system for studying global animal movement and
demography. Methods in Ecology and Evolution , 13 (2),
pp.419-431.
König, H.J., Kiffner, C., Kramer‐Schadt, S., Fürst, C., Keuling, O. and
Ford, A.T., 2020. Human–wildlife coexistence in a changing
world. Conservation Biology , 34 (4), pp.786-794.
Lindenmayer, D.B., Lavery, T. and Scheele, B.C., 2022. Why we need to
invest in large-scale, long-term monitoring programs in landscape
ecology and conservation biology. Current Landscape Ecology
Reports , 7 (4), pp.137-146.
Manfredo, M.J., Vaske, J.J. and Sikorowski, L., 2021. Human dimensions
of wildlife management. In Natural Resource Management (pp.
53-72).
Routledge.
Månsson, J., Eriksson, L., Hodgson, I., Elmberg, J., Bunnefeld, N.,
Hessel, R., Johansson, M., Liljebäck, N., Nilsson, L., Olsson, C. and
Pärt, T., 2023. Understanding and overcoming obstacles in adaptive
management. Trends in ecology & evolution , 38 (1),
pp.55-71.
Martin, S.W., O’Keeffe, J., Byrne, A.W., Rosen, L.E., White, P.W. and
McGrath, G., 2020. Is moving from targeted culling to BCG-vaccination of
badgers (Meles meles) associated with an unacceptable increased
incidence of cattle herd tuberculosis in the Republic of Ireland? A
practical non-inferiority wildlife intervention study in the Republic of
Ireland (2011-2017). Preventive veterinary medicine , 179 ,
p.105004.
McLane, A.J., Semeniuk, C., McDermid, G.J. and Marceau, D.J., 2011. The
role of agent-based models in wildlife ecology and
management. Ecological modelling , 222 (8), pp.1544-1556.
Morera‐Pujol, V., Mostert, P.S., Murphy, K.J., Burkitt, T., Coad, B.,
McMahon, B.J., Nieuwenhuis, M., Morelle, K., Ward, A.I. and Ciuti, S.,
2023. Bayesian species distribution models integrate presence‐only and
presence–absence data to predict deer distribution and relative
abundance. Ecography , 2023 (2), p.e06451.
Munguía-Carrara, M., 2020. From Human-Wildlife Confiicts to
Human-Wildlife Coexistence in Anthropocene
Landscapes. Agricultural Research & Technology: Open Access
Journal , 24 (4), pp.140-144.
Murphy, K.J., Ciuti, S. and Kane, A., 2020. An introduction to
agent‐based models as an accessible surrogate to field‐based research
and teaching. Ecology and evolution , 10 (22),
pp.12482-12498.
Murphy, K.J., Griffin, L.L., Nolan, G., Haigh, A., Hochstrasser, T.,
Ciuti, S. and Kane, A., 2022a. Applied autoethnography: A method for
reporting best practice in ecological and environmental
research. Journal of Applied Ecology , 59 (11),
pp.2688-2697.
Murphy, K.J., Morera‐Pujol, V., Ryan, E., Byrne, A.W., Breslin, P. and
Ciuti, S., 2022b. Habitat availability alters the relative risk of a
bovine tuberculosis breakdown in the aftermath of a commercial forest
clearfell disturbance. Journal of Applied Ecology , 59 (9),
pp.2333-2345.
Murphy, K.J., Byrne, A., Marples, N.M., O’Hagan, M.J., Kelly, D.J.,
Quinn, D., Breslin, P., Morera-Pujol, V., Khouri, R.M., Barrett, D. and
McGrath, G., 2024. Wildlife response to land-use change forces
encounters between zoonotic disease hosts and farms in agricultural
landscapes. Available at SSRN 5020308 .
Pebesma, E.J., 2018. Simple features for R: standardized support for
spatial vector data. R J. , 10 (1), p.439.
R Core Team (2024). R: A Language and Environment for Statistical
Computing_.
Ringelman, K.M., 2014. Predator foraging behavior and patterns of avian
nest success: What can we learn from an agent-based
model?. Ecological Modelling , 272 , pp.141-149.
Recio, M.R., Singer, A., Wabakken, P. and Sand, H., 2020. Agent-based
models predict patterns and identify constraints of large carnivore
recolonizations, a case study of wolves in Scandinavia. Biological
Conservation , 251 , p.108752.
Signer, J., Fieberg, J. and Avgar, T., 2019. Animal movement tools
(amt): R package for managing tracking data and conducting habitat
selection analyses. Ecology and evolution, 9(2), pp.880-890.
Silvy, N.J. ed., 2020. The Wildlife Techniques Manual: Volume 1:
Research. Volume 2: Management . JHU Press.
Simkin, R.D., Seto, K.C., McDonald, R.I. and Jetz, W., 2022.
Biodiversity impacts and conservation implications of urban land
expansion projected to 2050. Proceedings of the National Academy
of Sciences , 119 (12), p.e2117297119.
Skidmore, A.K., Coops, N.C., Neinavaz, E., Ali, A., Schaepman, M.E.,
Paganini, M., Kissling, W.D., Vihervaara, P., Darvishzadeh, R.,
Feilhauer, H. and Fernandez, M., 2021. Priority list of biodiversity
metrics to observe from space. Nature ecology &
evolution , 5 (7), pp.896-906.
Stephenson, P.J., Burgess, N.D., Jungmann, L., Loh, J., O’Connor, S.,
Oldfield, T., Reidhead, W. and
Shapiro, A., 2015. Overcoming the
challenges to conservation monitoring: integrating data from in-situ
reporting and global data sets to measure impact and
performance. Biodiversity , 16 (2-3), pp.68-85.
Tamiminia, H., Salehi, B., Mahdianpari, M., Quackenbush, L., Adeli, S.
and Brisco, B., 2020. Google Earth Engine for geo-big data applications:
A meta-analysis and systematic review. ISPRS journal of
photogrammetry and remote sensing , 164 , pp.152-170.
Richardson, S., Mill, A.C., Davis, D., Jam, D. and Ward, A.I., 2020. A
systematic review of adaptive wildlife management for the control of
invasive, non‐native mammals, and other human–wildlife
conflicts. Mammal Review , 50 (2), pp.147-156.
Teckentrup, L., Grimm, V., Kramer-Schadt, S. and Jeltsch, F., 2018.
Community consequences of foraging under fear. Ecological
Modelling , 383 , pp.80-90.
Thompson, N.E., Butts, D.J., Murillo, M.S., O’Brien, D.J., Christensen,
S.A., Porter, W.F. and Roloff, G.J., 2024. An individual-based model for
direct and indirect transmission of chronic wasting disease in
free-ranging white-tailed deer. Ecological Modelling , 491 ,
p.110697.
Von Essen, E., Turnbull, J., Searle, A., Jørgensen, F.A., Hofmeester,
T.R. and van der Wal, R., 2023. Wildlife in the Digital Anthropocene:
Examining human-animal relations through surveillance
technologies. Environment and Planning E: Nature and
Space , 6 (1), pp.679-699.
White, J.W., Rassweiler, A., Samhouri, J.F., Stier, A.C. and White, C.,
2014. Ecologists should not use statistical significance tests to
interpret simulation model results. Oikos , 123 (4),
pp.385-388.
Wickham, H., Francois, R., Henry, L. and Müller, K., 2014.
dplyr. A Grammar of Data Manipulation 2020 [Last accessed on
2020 Aug 12] Available from , p.Rproject.
Young, H.S., McCauley, D.J., Galetti, M. and Dirzo, R., 2016. Patterns,
causes, and consequences of anthropocene defaunation. Annual
review of ecology, evolution, and systematics , 47 (1),
pp.333-358.