SSR |
Forward primer |
|
Reverse primer |
|
Amplicon |
Motif |
Annealing |
name |
sequence (5’-3’) |
Tm |
sequence (5’-3’) |
Tm |
size (bp) |
Repeat |
Temperature |
162 |
TGATGTGAAAAGAACACCCC |
58.4 |
TGTGATTCCAGGGAGGAGTA |
58.1 |
216 |
(ATTTG)n |
62 |
1225 |
GGTCCCAATGACAAACAGTC |
57.8 |
GTTGGGTTTGGTTCTTGTTG |
58.0 |
183 |
(CCCAA)n |
62 |
1792 |
AACTAGTCGGATCGAGCCTT |
58.0 |
AATCACACAACTCCGCAAGT |
58.2 |
174 |
(CCCAA)n |
57 |
2656 |
AACCAAACCGCACTAAACTG |
57.8 |
GCACAATAGAGAGGGCAAAA |
58.0 |
277 |
(TGGTT)n |
62 |
2895 |
GTCATAGCCATCCCTTACCC |
58.3 |
TATTGCCCTGTTCTTCAGGA |
58.3 |
267 |
(AGTTC)n |
62 |
2916 |
GTGCCAAAACCAAAGTTGTC |
58.1 |
CCTCTCAACACAGGTTGCTT |
57.9 |
215 |
(ATTTT)n |
62 |
3332 |
CATGTACCTCGTGCAATGAA |
58.1 |
TTTAGCTTAGCAATCACGGG |
58.1 |
203 |
(TGTTG)n |
57 |
5417 |
AGTGTGCTAAGAATTTGGGC |
57.0 |
ACCATCAATTGTGATCGGAG |
58.4 |
203 |
(GATAT)n |
62 |
5608 |
GAGGCAAAGGATAAGGTGGT |
58.1 |
ACGAAGGGAAGAGAAAGGAA |
58.0 |
249 |
(AGGGA)n |
57 |
5726 |
GCAGCCAAGCCATTCTATTA |
58.0 |
AGCCCTTCCATGGAGAATTT |
59.9 |
223 |
(TTATT)n |
62 |
8376 |
ATGGAGCTGAACTGAACCAA |
58.3 |
TTGTACCAGAATGCCTGTCA |
57.7 |
254 |
(CTGAA)n |
62 |