http://dx.doi.org/10.17582/journal.pjz/2019. 51.1.141.148
Jurka, J., Kapitonov, V. V., Pavlicek, A., Klonowski, P., Kohany, O., & Walichiewicz, J. (2005). Repbase Update, a database of eukaryotic repetitive elements. Cytogenetic and genome research110 (1-4), 462–467.
Kanehisa, M., & Goto, S. (2000). KEGG: kyoto encyclopedia of genes and genomes. Nucleic acids research , 28 (1), 27–30.https://doi.org/10.1093/nar/28.1.27
Kawato, S., Nishitsuji, K., Arimoto, A., Hisata, K., Kawamitsu, M., & Hirono, I. (2021). Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus . G3 Genes| Genomes| Genetics . https://doi.org/10.1093/ g3journal/jkab268
Kim, D., Langmead, B. & Salzberg, S. (2015). HISAT: a fast spliced aligner with low memory requirements. Nature Methods  12(4), 357–360.https://doi.org/10.1038/ nmeth.3317
Kikuchi, G., Yoshida, T., & Noguchi, M. (2005). Heme oxygenase and heme degradation. Biochemical Biophysical Research Communication, 338 (1), 558–567. https://doi.org/10. 1016/j.bbrc.2005.08.020
Korf, I. (2004). Gene finding in novel genomes. BMC Bioinformatics , 5 (1), 59.https://doi.org/10.1186/1471-2105-5-59
Koyama, T., Asakawa, S., Katagiri, T., Shimizu, A., Fagutao, F.F., & Mavichak, R. (2010). Hyper-expansion of large DNA segments in the genome of kuruma shrimp, Marsupenaeus japonicus . BMC Genomics ,11 (1), 1–12.
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature methods9 (4), 357–359.https://doi.org/10.1038/nmeth.1923
Li, H., & Durbin, R. (2009). Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics , 25 (14), 1754–1760. https://doi.org/10.1093/ bioinformatics/btp324
Li, L., Stoeckert, C. J., & Roos, D. S. (2003). OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome research , 13 (9), 2178–2189.