Hi-C library sequencing and chromosome anchoring
The Hi-C library was prepared using standard procedures, it yielded a total of 430 Million reads (65 Gb). The Hi-C reads were first mapped to the above draft genome using Juicer (Durand et al., 2016). Hi-C association chromosome assembly was conducted with the 3D-DNA pipeline (Dudchenko et al., 2017). Simultaneously, the completeness of genes was also assessed using BUSCO (Simao, Waterhouse, Ioannidis, Kriventseva, & Zdobnov, 2015). The detailed description in File S1.