Figure 2 Manhattan plots showing selection footprints detected between samples collected from susceptible or resistant cultivars in Cuba in 2011 (A) and in 2013 (B). The x axis shows the distribution of each SNP along the core genome of P. fijiensis (scaffolds are represented by different colors) and the y axis indicates the p-value of each SNP obtained with the association test using BayPass and the covariate Cov-Co or the local score obtained with ξ=2. The horizontal dashed lines correspond to the chromosome-wide threshold α = 1% calculated for each scaffold. For both sampling years, all genomic regions containing SNPs with local scores above the significance threshold are indicated by gray vertical bars. Regions identified in populations sampled in 2011 and 2013 are indicated with a * symbol.