Note: Summary of the results obtained with the Wilcoxon test or the redundancy analysis (RDA) for all the genomic regions detected using genome scan analyses. Information (name, corresponding scaffold and size) for each region is given. For the two phenotypic traits investigated (DLA-R or DLA-S), the haplotype (identified with individual sequencing data) significantly correlated with the corresponding trait (i.e. the advantageous haplotype) is indicated by a colored circle (blue = Haplotype 1, green = Haplotype 2). Green ticks or red crosses indicate which method was able to define the advantageous haplotype. The regions in which haplotypes were identified as being significantly associated with a higher diseased leaf area measured on the resistant cultivars are written in blue, on the susceptible cultivar in green, and on both cultivars in blue and green. DLA-R and DLA-S=Diseased Leaf Area measured on the resistant (R) or the susceptible (S) cultivars.

Table 4 Architecture of host adaptation in P. fijiensispopulations