Figure
2 Manhattan plots showing selection footprints detected between samples
collected from susceptible or resistant cultivars in Cuba in 2011 (A)
and in 2013 (B). The x axis shows the distribution of each SNP along the
core genome of P. fijiensis (scaffolds are represented by
different colors) and the y axis indicates the p-value of each SNP
obtained with the association test using BayPass and the covariate
Cov-Co or the local score obtained with ξ=2. The horizontal dashed lines
correspond to the chromosome-wide threshold α = 1% calculated for each
scaffold. For both sampling years, all genomic regions containing SNPs
with local scores above the significance threshold are indicated by gray
vertical bars. Regions identified in populations sampled in 2011 and
2013 are indicated with a * symbol.