Table 2 Candidate genomic regions involved in host adaptation detected among Pool-Seq data using genome scan analysis.
Note: The genome scan results and genetic differentiation (FST) obtained with the pools sampled in 2011 and in 2013 are presented in this table. Information concerning every region detected with genome scan analyses, i.e., the name of the region, the corresponding scaffold, the position on the scaffold (start/end) and the size of the region are provided. For each genomic region, tick symbols highlighted in orange indicate which method (BayPass with the covariate Cov-co for 2011 and 2013, BayPass with the covariates Cov-dR or Cov-dS for 2011 or poolFreqDiff for 2011 and 2013) and which local score tuning parameter value (ΞΎ=1, 2, or 3) was used to detect the region. Significant FST values (p < 0.05) between each pair of populations sampled in the same location are indicated in green.
Table 3 Relationship between haplotypes in candidate genomic regions involved in host adaptation and traits related to quantitative pathogenicity