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species: Insight into the phylogeny of the genus Budorcas.”International journal of biological macromolecules 121 :
223-232.
Data Availability Statement: The data presented in this study
are available in the Sequence Read Archive (SRA) database, BioProject:
PRJNA776710 and PRJNA778655. The Takin1.0 genome has been submitted to
the GenBank database.
Author Contributions: Conceptualization, Y. J. and A. L.;
Methodology and Validation, Q. Y., K. C., R. L. and X. D.; Formal
Analysis, A. L. and Q. Y.; Resources, Y. L., K. J. and L. Z.; Writing –
Original Draft Preparation, A. L.; Writing – Review & Editing, Y. J.,
R. L., Q. Y. and X. D.; Supervision, Y. J. and L. Z.; Project
Administration, Y. J. and A. L.; Funding Acquisition, L. Z. All authors
have read and agreed to the published version of the manuscript.
Conflicts of Interest: The authors declare no competing
financial interest.
Supplemental Figures and Tables (Captions)
Figure S1. The collinearity relationship between takin and goat
genome.
Figure S2. The collinearity relationship between takin and
sheep genome.
Figure S3. Phylogeny of the subfamily Caprinae in the genomic
level with bootstrap.
Table S1 Summary of HiFi reads.
Table S2 Comparison of well-assembled genomes.
Table S3 Assessment of genome completeness.
Table S4 Repeat content of Takin.
Table S5 Simple repeats content of Takin.
Table S6 Lengths of reconstructed ancestral chromosome (chr)
karyotypes of Bovidae
Table S7 Genome resequencing of 9 golden takins.
Table S8 The statistics of ROH.
Table 1. Assembly statistics of takin genome