Figure 2. Selective sweep around the Cyp6aa/Cyp6p cluster inAnopheles gambiae from Uganda.
Upper panel Haplotype contingency for the selective sweep (“Sweep“),Cyp6p4-236M SNP (”P4”) and the Cyp6aap-Dup1 (”Dup1”). Each vertical bar represents a single haplotype, colour-coded to show whether it is a copy of the swept haplotype (blue) and whether it carries the SNP (purple), the TE insertion (green) and the duplication (orange). The swept haplotype and the Cyp6p4-236M SNP overlap almost completely, while the duplication is found on a subset of these haplotypes. Lower panel Extended Haplotype Homozygosity (EHH) plots around the CYP6P4-236M and CYP6AA1-Dup1 variants show slower loss of homozygosity in the swept haplotypes than in the wild-type.