REFERENCES
1. Wu Z, McGoogan JM. Characteristics of and Important Lessons From the Coronavirus Disease 2019 (COVID-19) Outbreak in China: Summary of a Report of 72 314 Cases From the Chinese Center for Disease Control and Prevention. JAMA. 7 avr 2020;323(13):1239‑42.
2. Havers FP, Pham H, Taylor CA, Whitaker M, Patel K, Anglin O, et al. COVID-19-Associated Hospitalizations Among Vaccinated and Unvaccinated Adults 18 Years or Older in 13 US States, January 2021 to April 2022. JAMA Intern Med. 1 oct 2022;182(10):1071‑81.
3. Vardavas CI, Mathioudakis AG, Nikitara K, Stamatelopoulos K, Georgiopoulos G, Phalkey R, et al. Prognostic factors for mortality, intensive care unit and hospital admission due to SARS-CoV-2: a systematic review and meta-analysis of cohort studies in Europe. Eur Respir Rev Off J Eur Respir Soc. 31 déc 2022;31(166):220098.
4. Hadjadj J, Yatim N, Barnabei L, Corneau A, Boussier J, Smith N, et al. Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients. Science. 7 août 2020;369(6504):718‑24.
5. McElvaney OJ, McEvoy NL, McElvaney OF, Carroll TP, Murphy MP, Dunlea DM, et al. Characterization of the Inflammatory Response to Severe COVID-19 Illness. Am J Respir Crit Care Med. 15 sept 2020;202(6):812‑21.
6. Arze CA, Springer S, Dudas G, Patel S, Bhattacharyya A, Swaminathan H, et al. Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome. Cell Host Microbe. 11 août 2021;29(8):1305-1315.e6.
7. van Rijn AL, Roos R, Dekker FW, Rotmans JI, Feltkamp M. Torque teno virus load as marker of rejection and infection in solid organ transplantation - A systematic review and meta-analysis. Rev Med Virol. 3 sept 2022;e2393.
8. Maggi F, Pifferi M, Fornai C, Andreoli E, Tempestini E, Vatteroni M, et al. TT virus in the nasal secretions of children with acute respiratory diseases: relations to viremia and disease severity. J Virol. févr 2003;77(4):2418‑25.
9. Pifferi M, Maggi F, Andreoli E, Lanini L, Marco ED, Fornai C, et al. Associations between nasal torquetenovirus load and spirometric indices in children with asthma. J Infect Dis. 1 oct 2005;192(7):1141‑8.
10. Young JC, Chehoud C, Bittinger K, Bailey A, Diamond JM, Cantu E, et al. Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients. Am J Transplant Off J Am Soc Transplant Am Soc Transpl Surg. janv 2015;15(1):200‑9.
11. Marty FM, Chen K, Verrill KA. How to Obtain a Nasopharyngeal Swab Specimen. N Engl J Med. 28 mai 2020;382(22):e76.
12. van Buuren S, Groothuis-Oudshoorn K. mice: Multivariate Imputation by Chained Equations in R. J Stat Softw. 12 déc 2011;45(3):1‑67.
13. Solis M, Benotmane I, Gallais F, Caillard S, Fafi-Kremer S. Torque teno virus viral load predicts SARS-CoV-2 vaccine response in kidney transplant recipients. J Med Virol. juill 2023;95(7):e28936.
14. Graninger M, Stumpf J, Bond G, Görzer I, Springer DN, Kessel F, et al. Prediction of humoral and cellular immune response to COVID-19 mRNA vaccination by TTV load in kidney transplant recipients and hemodialysis patients. J Clin Virol Off Publ Pan Am Soc Clin Virol. mai 2023;162:105428.
15. Roberto P, Cinti L, Napoli A, Paesani D, Riveros Cabral RJ, Maggi F, et al. Torque teno virus (TTV): A gentle spy virus of immune status, predictive marker of seroconversion to COVID-19 vaccine in kidney and lung transplant recipients. J Med Virol. févr 2023;95(2):e28512.
16. Baron A, Peyrony O, Salmona M, Mahjoub N, Ellouze S, Anastassiou M, et al. Impact of Fast SARS-CoV-2 Molecular Point-Of-Care Testing on Patients” Length of Stay in an Emergency Department. Microbiol Spectr. 2022;10:e0063622.
17. Merenstein C, Liang G, Whiteside SA, Cobián-Güemes AG, Merlino MS, Taylor LJ, et al. Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome. mBio. 31 août 2021;12(4):e0177721.
18. Iša P, Taboada B, García-López R, Boukadida C, Ramírez-González JE, Vázquez-Pérez JA, et al. Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease. BMC Infect Dis. 19 oct 2022;22(1):792.
19. Solis M, Gallais F, Garnier-Kepka S, Lefebvre N, Benotmane I, Ludes PO, et al. Combining predictive markers for severe COVID-19: Torquetenovirus DNA load and SARS-CoV-2 RNAemia. J Clin Virol Off Publ Pan Am Soc Clin Virol. mars 2022;148:105120.
Table 1. Patient Characteristics. Data are number of patients with percentage (%) or median with interquartile range [IQR].