REFERENCES
Baldo L, Tavecchia G, Rotger A, Igual JM, Riera JL. (2023). Insular
holobionts: persistence and seasonal plasticity of the Balearic wall
lizard (Podarcis lilfordi ) gut microbiota. PeerJ 11:e14511. DOI
10.7717/peerj.14511.
Bestion E, Jacob S, Zinger L, Di Gesu L, Richard M, White J, Cote J.
(2017). Climate warming reduces gut microbiota diversity in a vertebrate
ectotherm. Nature Ecology & Evolution 1(6):161. DOI
10.1038/s41559-017-0161.
Chen S, Zhou Y, Chen Y, Gu J. (2018). Fastp: an ultra-fast all-in-one
FASTQ preprocessor. Bioinformatics 34(17):i884-i890. DOI
10.1093/bioinformatics/bty560.
Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. (2010). The Sanger FASTQ
file format for sequences with quality scores, and the Solexa/Illumina
FASTQ variants. Nucleic Acids Research 38(6):1767-1771. DOI
10.1093/nar/gkp1137.
Cohen ML, Potter ME, Pollard RA, Feldman RA. (1980). Turtle-associatedsalmonellosis in the United States, effect of public health
action,1970 to 1976. JAMA 243 (12):1247-9. DOI
10.1001/jama.1980.03300380027016.
Colston TJ, Noonan BP, Jackson CR. (2015). Phylogenetic analysis of
bacterial communities in different regions of the gastrointestinal tract
of Agkistrodon piscivorus , the cottonmouth snake. PLoS One
10(6):e0128793. DOI 10.1371/journal.pone.0128793.
Costello EK, Gordon JI, Secor SM, Knight R. (2010). Postprandial
remodeling of the gut microbiota in Burmese pythons . The ISME
Journal 4(11):1375-1385. DOI https://doi.org/10.1038/ismej.2010.71.
David P. (2001). On the occurrence of the snake genus Ovophis (Serpentfs: Viperidae: Crotalinae) on Hainan island, China. Acta
Zootaxonomica Sinica 26(3): 388-393.
Doré J, Blottière H. (2015). The influence of diet on the gut microbiota
and its consequences for health. Current Opinion in Biotechnology
32:195-199. DOI 10.1016/j.copbio.2015.01.002.
Flint HJ, Scott KP, Louis P, Duncan SH. (2012). The role of the gut
microbiota in nutrition and health. Nature Reviews Gastroenterology
Hepatology 9(10): 577-589. DOI
https://doi.org/10.1038/nrgastro.2012.156.
Fu L, Niu B, Zhu Z, Wu S, Li W. (2012). CD-HIT: accelerated for
clustering the next-generation sequencing data. Bioinformatics
28(23):3150-2. DOI 10.1093/bioinformatics/bts565.
Gao WZ, Yang Y, Shi L. (2023). Seasonal dietary shifts alter the gut
microbiota of a frugivorous lizard Teratoscincus roborowskii ( Squamata, Sphaerodactylidae) . Ecology and Evolution
13( 8) : e10363. DOI 10.22541/au.167611328.84712536/v1.
Greenspan SE, Migliorini GH, Lyra ML, Pontes MR, Carvalho T, Ribeiro LP,
Moura-Campos D, Haddad CF, Toledo LF, Romero GQ, Becker CG. (2020).
Warming drives ecological community changes linked to host-associa ted
microbiome dysbiosis. Nature Climate Change 10, 1057-1061. DOI
https://doi.org/10.1038/s41558-020-0899-5.
Grupka LM, Ramsay EC, Bemis DA. (2006). Salmonella surveillance
in a collection of rattlesnakes (Crotalus spp. ). Journal
of Zoo and Wildlife Medicine 37(3):306-312. DOI: 10.1638/05-059.1.
Guo P, Liu Q, Wu YY, Zhu F, Zhong GH. (2022). Pitvipers of China.
Beijing: Science Press 212-220.
Guo P, Liu Q, Zhu F, Zhong GH, Chen X, Myers EA, Che J, Zhang L, Ziegler
T, Nguyen T Q, Burbrink FT. (2016). Complex longitudinal diversification
across South China and Vietnam in Stejneger’s pit viper,Viridovipera stejnegeri (Schmidt, 1925) (Reptilia: Serpentes:
Viperidae). Molecular ecology 25(12): 2920-2936. DOI
https://doi.org/10.1111/mec.13658.
Hertli S, Zimmermann P. (2022). Molecular interactions between the
intestinal microbiota and the host. Molecular microbiology
117( 6) :1297-1307. DOI https://doi.org/10.1111/mmi.14905.
Hong, PY, Wheeler E, Cann Isaac KO, Mackie Roderick I. (2011).
Phylogenetic analysis of the fecal microbial community in herbivorous
land and marine iguanas of the Galapagos Islands using 16S rRNA-based
pyrosequencing. ISME Journal 5(9): 1461-1470. DOI
https://doi.org/10.1038/ismej.2011.33.
Hu X, Liu G, Shafer ABA, Wei Y, Zhou J, Lin S, Wu H, Zhou M, Hu D, Liu
S. (2017). Comparative analysis of the gut microbial communities in
forest and alpine musk deerusing high-throughput sequencing. Frontiers
in Microbiology 8(e2836):572. DOI 10.3389/fmicb.2017.00572.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. (2010).
Prodigal: prokaryotic gene recognition and translation initiation site
identification. BMC Bioinformatics 11:119. DOI 10.1186/1471-2105-11-119.
Jiang HY, Ma JE, Li J, Zhang XJ, Li LM, He N, Liu HY, Luo SY, Wu ZJ, Han
RC, Chen JP. (2017). Diets alter the gut microbiome of crocodile
lizards. Frontiers in Microbiology 8: 2073. DOI
10.3389/fmicb.2017.02073.
Kartzinel TR, Hsing JC, Musili PM, Brown BR, Pringle RM. (2019).
Covariation of diet and gut microbiome in African megafauna. Proceedings
of the National Academy of Sciences of the United States of America
116(47):23588-23593. DOI 10.1073/pnas.1905666116.
Kohl KD, Brun A, Magallanes M, Brinkerhoff J, Laspiur A, Acosta JC,
Caviedes-Vidal E, Bordenstein SR. (2017). Gut microbial ecology of
lizards: insights into diversity in the wild, effects of captivity,
variation across gut regions and transmission. Molecular Ecology
26(4):1175-1189. DOI 10.1111/mec.13921.
Kovacs A, Ben-Jacob N, Tayem H, Halperin E, Iraqi FA, Gophna U. (2011).
Genotype is a stronger determinant than sex of the mouse gut microbiota.
Microbial Ecology 61(2):423-8. DOI 10.1007/s00248-010-9787-2.
Kundu P, Blacher E, ElinavE, Pettersson S. (2017). Our gut microbiome:
the evolving inner self. Cell 171(7):1481-1493 DOI
10.1016/j.cell.2017.11.024.
Langmead B, Salzberg SL. (2012). Fast gapped-read alignment with
Bowtie2. Nature Methods 9(4):357-9. DOI 10.1038/nmeth.1923.
Langmead B, Wilks C, Antonescu V, Charles R. (2019). Scaling read
aligners to hundreds of threads on general-purpose processors.
Bioinformatics 35(3):421-432. DOI 10.1093/bioinformatics/bty648.
Li D, Liu CM, Luo R, Sadakane K, Lam TW. (2015). MEGAHIT: an ultra-fast
single-node solution for large and complex metagenomics assembly via
succinct de Bruijn graph. Bioinformatics 31(10):1674-6. DOI
10.1093/bioinformatics/btv033.
Li D, Luo R, Liu CM, Leung CM, Ting HF, Sadakane K, Yamashita H, Lam TW.
(2016). MEGAHIT v1.0: A fast and scalable metagenome assembler driven by
advanced methodologies and community practices. Methods 102:3-11. DOI
10.1016/j.ymeth.2016.02.020.
Li DL, Sun Y, Xu FR. (2021). Differences in faeces microbiome
composition and characteristics between two populations of Ptyas
dhumnade . Chinese Journal of Zoology 56(5):11. DOI
10.13859/j.cjz.202105007.
Li G, Yin B, Li J, Wang J, Wei W, Bolnick DI, Wan X, Zhu B, Zhang Z.
(2020). Host-microbiota interaction helps to explain the bottom-up
effects of climate change on a small rodent species. The ISME journal
14(7):1795-1808. DOI https://doi.org/10.1038/s41396-020-0646-y.
Lindsay EC, Metcalfe NB, Llewellyn MS. (2020). The potential role of the
gut microbiota in shaping host energetics and metabolic rate. Journal Of
Animal Ecology 89( 11) : 2415–2426. DOI
10.1111/1365-2656.13327.
Lombard V, Ramulu HG, Drula E, Coutinho PM, Henrissat B. (2014). The
carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids
Research 42(Database issue):D490-5. DOI 10.1093/nar/gkt1178.
Lu SX, Li PP, Lu YY, Yu QL, Zhou ZY. (2019). Fecal microbial diversity
of three species of Elaphe in captive breeding. Chinese Journal
of Zoology 54(2): 270-278. DOI 10.1385.9/j.cjz.201902013.
McLaughlin RW, Cochran PA, Dowd SE. (2015). Metagenomic analysis of the
gut microbiota of the Timber Rattlesnake, Crotalus horridus .
Molecular Biology Reports 42(7):1187-95. DOI 10.1007/s11033-015-3854-1.
Mermin J, Hoar B, Angulo FJ. (1997). Iguanas and Salmonella marina
infection in children: a reflection of the increasing incidence of
reptile-associated salmonellosis in the United States. Pediatrics
99: 399-402. DOI 10.1542/peds.99.3.399.
Mundy R, Macdonald T T, Dougan G. (2010). Citrobacter rodentium of mice and man. Cellular Microbiology 7(12): 1697-1706. DOI
10.1111/j.1462-5822.2005.00625.x.
O’Donnell MP, Fox BW, Chao PH, Schroeder FC, Sengupta P. (2020). A
neurotransmitter produced by gut bacteria modulates host sensory
behaviour. Nature 583(7816):415-420. DOI 10.1038/s41586-020-2395-5.
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. (2017). Salmon
provides fast and bias-aware quantification of transcript expression.
Nature Methods 14(4):417-419. DOI 10.1038/nmeth.4197.
Qin N, Yang F, Li A, Prifti E, Chen Y, Shao L, Guo J, Le Chatelier E,
Yao J, Wu L, Zhou J, Ni S, Liu L, Pons N, Batto JM, Kennedy SP, Leonard
P, Yuan C, Ding W, Chen Y, Hu X, Zheng B, Qian G, Xu W, Ehrlich SD,
Zheng S, Li L. (2014). Alterations of the human gut microbiome in liver
cirrhosis. Nature 513(7516):59-64. DOI 10.1038/nature13568.
Qin Z, Wang S, Guo D, Zhu J, Chen H, Bai L, Luo X, Yin Y. (2019).
Comparative analysis of intestinal bacteria among venom secretion and
non-secrection snakes. Scientific Reports 9(1):6335. DOI
10.1038/s41598-019-42787-6.
R Development Core Team. (2020). R: a language and environment for
statistical computing. Vienna, Austria: R foundation for
statistical computing. Available at http://www.Rproject.org.
Rosshart SP, Vassallo BG, Angeletti D, Hutchinson DS, Morgan AP, Takeda
K, Hickman HD, McCulloch JA, Badger JH, Ajami NJ, Trinchieri G,
Pardo-Manuel De Villena F, Yewdell JW, Rehermann B. (2017). Wild mouse
gut microbiota promotes host fitness and improves disease resistance.
Cell 171(5):1015-1028.e13. DOI 10.1016/j.cell.2017.09.016.
Schröter M, Roggentin P, Hofmann J, Speicher A, Laufs R, Mack D. (2004).
Pet snakes as a reservoir for Salmonella enterica subsp.
diarizonae (Serogroup IIIb): a prospective study. Applied and
Environmental Microbiology 70(1):613-5. DOI 10.1128/AEM.70.1.613-615.
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS,
Huttenhower C. (2011). Metagenomic biomarker discovery and explanation.
Genome Biology 12(6):R60. DOI 10.1186/gb-2011-12-6-r60.
Shi YD, Sun H. (2017). Characterization of the intestinal microflora of
. Elaphe taeniura Journal of Hunan Agricultural University
(Natural Sciences) 43(03):292-297. DOI 10.13331/j.cnki.jhau.
Siddiqui R, Maciver SK, Khan NA. (2022). Gut microbiome-immune system
interaction in reptiles. Journal of Applied Microbiology
132( 4) :2558-2571. DOI 10.1111/jam.15438.
Sun BH, Wang X, Bernstein S, A. Huffman M, Xia DP, Gu ZY, Chen R, K.
Sheeran L, Wagner R. S, Li JH. (2016). Marked variation between winter
and spring gut microbiota in free-ranging Tibetan macaques (Macaca
thibetana ). Scientific Reports 6, 26035. DOI 10.1038/srep26035.
Tang WJ, Yang SJ, Cheng YQ, Zhang C, Zhu GX. (2019). Intestine
microflora composition and distribution characteristics inRhabdophis tigrinus (Squamata: Colubridae). Chinese Journal of
Zoology 54(4):589-598. DOI 10.13859/j.cjz.201904016.
Tang W, Zhu G, Shi Q, Yang S, Ma T, Mishra SK, Wen A, Xu H, Wang Q,
Jiang Y, Wu J, Xie M, Yao Y, Li D. (2019). Characterizing the microbiota
in gastrointestinal tract segments of Rhabdophis subminiatus :
dynamic changes and functional predictions. Microbiology Open 8(7):
e00789. DOI 10.1002/mbo3.789.
Wardman JF, Bains RK, Rahfeld P, Withers SG. (2022). Carbohydrate-active
enzymes (CAZymes) in the gut microbiome. Nature Reviews Microbiology
20(9):542-556. DOI https://doi.org/10.1038/s41579-022-00712-1.
Waterman SH, Juarez G, Carr SJ, Kilman L. (1990). Salmonella arizonae infections in Latinos associated with rattlesnake folk
medicine. American Journal Of Public health 80(3): 286-289. DOI
https://doi.org/10.2105/ajph.80.3.286.
Wei Y, Zhou M, Fang W, Liu Q, Mao H, Chen B, Zhang T, Xu Y, Zhang W,
Zheng Y, Hu X. (2023). Differences in the luminal and mucosal gut
microbiomes and metabolomes of oriental rat snake (Ptyas
mucosus) . Applied Microbiology and Biotechnology 107(10):3257-3271. DOI
https://doi.org/10.1007/s00253-023-12524-1.
Wood DE, Lu J, Langmead B. (2019). Improved metagenomic analysis with
Kraken2. Genome biology 20(1):257. DOI
https://doi.org/10.1186/s13059-019-1891-0.
Yang J, Liu W, Han X, Hao X, Yao Q, Du W. (2024). Gut microbiota
modulation enhances the immune capacity of lizards under climate
warming. Microbiome 12(1): 37. DOI
https://doi.org/10.1186/s40168-023-01736-2.
Zafar H, Saier MH Jr. (2021). Gut Bacteroides species in health and
disease. Gut Microbes 13(1):1-20. DOI
https://doi.org/10.1080/19490976.2020.1848158.
Zhang B, Ren J, Yang D, Liu S, Gong X. (2019). Comparative analysis and
characterization of the gut microbiota of four farmed snakes from
southern China. PeerJ 7:e6658. DOI https://doi.org/10.7717/peerj.6658.
Zhang H, Yohe T, Huang L, Entwistle S, Wu P, Yang Z, Busk PK, Xu Y, Yin
Y. (2018). dbCAN2: a meta server for automated carbohydrate-active
enzyme annotation. Nucleic Acids Research 46(W1):W95-W101. DOI
https://doi.org/10.1093/nar/gky418.
Zhang L, Yang F, Li T, Dayananda B, Lin L, Lin C. (2022). Lessons from
the diet: Captivity and sex shape the gut microbiota in an oviparous
lizard (Calotes versicolor) . Ecology and Evolution 12(2):e8586.
DOI https://doi.org/10.1002/ece3.8586.
Zhang W, Li N, Tang X, Liu N, Zhao W. (2018). Changes in intestinal
microbiota across an altitudinal gradient in the lizardPhrynocephalus vlangalii . Ecology and Evolution 8(9):4695-4703.
DOI https://doi.org/10.1002/ece3.4029.
Zhao EM, Jiang YM, Huang QY, Zhao H, Huang MH, Ma JF, Zheng J, Huang ZJ,
Wei G, Yang DT, Li JD, Zong Y. (1998). Fauna Sinica: Reptilia Vol.3
Squamata Serpentes. Beijing: Science Press 453-463.
Zhu W, Shi X, Qi Y, Wang X, Chang L, Zhao C, Zhu L, Jiang J. (2022).
Commensal microbiota and host metabolic divergence are associated with
the adaptation of Diploderma vela to spatially heterogeneous
environments. Integrative Zoology 17(3):346-365. DOI
https://doi.org/10.1111/1749-4877.12590.