Supplementary files
Supplementary File_S1 Overview of the total metaproteome identified at D3 and D7 showing the taxonomic annotation (LCA score > 80%) obtained from mPies using our Combined-Metagenome Database.
Supplementary File_S2 Protein identification obtained from the publicly available databases for antimicrobial resistance (CARD), plastic metabolism (PlasticsDB), and virulence factor (VFDBs).
Supplementary File_S3 Fold-change analysis summary using Skyline when comparing protein abundance ratio at D7 and D3.
Supplementary File_S4 Peptide Summary Exports generated by Protein Pilot, including peptide sequences, and associated metadata for each condition and replicate.
Supplementary File_S5 Protein Summary Exports generated by Protein Pilot, and associated metadata for each condition and replicate.