As the reviewer is, no doubt aware, the article was submitted as part of a special issue for IJQC, using the interactive Authorea publishing system, including interactive figures, raw data, etc. We note that almost all the issues noted derived from bugs in generating static PDF files from the interactive website and discuss below. With the help of the Authorea developers, we believe we have fixed most, if not all of these issues.
In the revised manuscript, we have gone through the text thoroughly to improve the quality of the writing, fix a few minor typos, etc.
The key omission in the paper is any attempt to provide confidence in the deductions made about the differences in accuracy between the methods compared. Confidence intervals on each of the estimators, estimates of success rates and their errors, and pairwise hypothesis tests, at a minimum, must be added before publication. With this data in hand the new version can make quantitative estimates of the differences between the methods.
See comments below.