Abstract
Trans-activation response DNA binding protein of 43kDa (TDP-43)
regulates a great variety of cellular processes in the nucleus and
cytosol. In addition, a defined subset of neurodegenerative diseases is
characterized by nuclear depletion of TDP-43 as well as cytosolic
mislocalization and aggregation. To perform its diverse functions TDP-43
can associate with different ribonucleoprotein complexes. Combined with
transcriptomics, MS interactome studies have unveiled associations
between TDP-43 and the spliceosome machinery, polysomes and RNA
granules. Moreover, the highly dynamic, low-valency interactions
regulated by its low-complexity domain calls for innovative proximity
labeling methodologies. In addition to protein partners, the analysis of
posttranslational modifications showed that they may play a role in the
nucleocytoplasmic shuttling, RNA binding, liquid-liquid phase separation
and protein aggregation of TDP-43. Here we review the various TDP-43
ribonucleoprotein complexes characterized so far, how they contribute to
the diverse functions of TDP-43, and roles of post-translational
modifications. Further understanding of the fluid dynamic properties of
TDP-43 in ribonucleoprotein complexes, RNA granules, and self-assemblies
will advance the understanding of RNA processing in cells and perhaps
help to develop novel therapeutic approaches for TDPopathies.