Strong environmental and genome-wide population differentiation
underpins adaptation and high genomic vulnerability in the dominant
Australian kelp (Ecklonia radiata)
Abstract
Ongoing and predicted range loss of kelp forests in response to climatic
stressors are pressing marine managers to look into the adaptive
capacity of populations to inform conservation strategies.
Characterising how adaptive genetic diversity and structure relate to
present and future environmental variation represents an emerging
approach to quantifying kelp vulnerability to environmental change and
identifying which populations have the genetic material to handle future
ocean conditions. The dominant Australian kelp, Ecklonia radiata,
was genotyped from 10 locations spanning 2,000 km of coastline and a
9.5°C average temperature gradient, along the east coast of Australia, a
global warming hotspot. ddRAD sequencing was used to generate 10,700
high quality single nucleotide polymorphisms (SNPs) and characterize
levels of neutral and adaptive genomic diversity and structure. The
adaptive dataset, reflecting portions of genome putatively under
selection, was used to infer genomic vulnerability by 2050 under the RCP
8.5 scenario. There was strong neutral genetic differentiation between
Australia mainland and Tasmania, but only weak genetic structure among
mainland populations within the main path of the East Australian
Current. Genetic diversity was highest in the centre of the range, and
lowest in the warm-edge population. The adaptive SNP candidates revealed
similar genetic structure patterns with a spread of adaptive loci across
most warm (northern) populations. The lowest, but most unique, adaptive
genetic diversity values were found in both warm and cool population
edges, indicating local adaptation but low evolutionary potential.
Critically, genomic vulnerability modelling identified high levels of
vulnerability to future environmental conditions in Tasmania.
Populations of kelp at range edges are unlikely to adapt and keep pace
with predicted climate change. Ensuring the persistence of these kelp
forests, by boosting resilience to climate change, may require active
management strategies with assisted adaptation in warm-edge (northern)
populations and assisted gene flow in cool-edge (Tasmania) populations.