Wildlife population dynamics are modulated by abiotic and biotic factors, typically climate, resource availability, density-dependent effects, and predator-prey interactions. Understanding if human-caused disturbances shape these processes is needed for the conservation and management of ecological communities within increasingly human-dominated landscapes. Garnering this understanding is difficult due to the lack of long-term longitudinal data on wildlife populations. Concurrently, the interplay between long-term human-mediated disturbances, climate, and predator density on ungulate population dynamics has been under-studied. Using a 50-year time series (1962-2012) on mule deer (Odocoileus hemionus) demographics, seasonal weather, predator density, and oil and gas development patterns from the North Dakota Badlands to investigate the long-term effects of landscape-level disturbance, we aimed to evaluate if harsh weather conditions in-combination with energy development and predators affected fall mule deer recruitment. We found that density-dependent effects and harsh seasonal weather primarily drove recruitment in the North Dakota Badlands. Recruitment was further shaped by interacting effects of harsh seasonal weather and predator presence in the form of high coyote density. Additionally, we found that fall recruitment was subtly modulated by interactions between seasonal weather and energy development (i.e., lower recruitment when harsher weather was combined with higher density of active oil and gas wells), and that the combined effect of predator density and energy development was not interactive but rather additive. Our analysis demonstrates the effect of energy development by modulating mule deer recruitment fluctuations concurrent with main recruitment drivers being biotic (density-dependency, habitat, predation) and abiotic (harsh seasonal weather, woody vegetation encroachment). A pattern emerges of density dependence, presumably due to limited quality habitat, being the primary factor influencing fall fawn recruitment in mule deer. Secondarily, stochastic weather events periodically cause dramatic declines in recruitment. Finally, the interactions between human disturbance and predation can be additive to the aforementioned drivers of recruitment and subsequently cause further declines.

A document by Israel Cruz-Jiménez. Click on the document to view its contents.

Plant and soil biodiversity can have significant effects on herbivore resistance mediated by plant metabolites. Here, we disentangled the independent effects of plant diversity and soil legacy on constitutive and herbivore-induced plant metabolomes of three plant species in two complementary microcosm experiments. First, we grew plants in sterile soil with three different plant diversity levels. Second, single plant species were grown on soil with different plant diversity-induced soil legacies. We infested a subset of all plants with Spodoptera exigua larvae, a generalist leaf-chewing herbivore, and assessed foliar and root metabolomes. Neither plant diversity nor soil legacy had significant effects on overall foliar, root, or herbivore-induced metabolome composition. Herbivore-induced metabolomes, however, differed from those of control plants. We also detected 139 significantly regulated metabolites by comparing plants grown in monocultures with conspecifics growing in plant or soil legacy mixtures. Moreover, plant-plant and plant-soil interactions regulated 141 metabolites in herbivore-induced plants. Taken together, plant diversity and soil legacy independently alter the concentration and induction of plant metabolites, thus affecting the plant's defensive capability. This is a first step towards disentangling plant and soil biodiversity effects on herbivore resistance, thereby improving our understanding of the mechanisms that govern ecosystem functioning.

A document by Hongyong Wang. Click on the document to view its contents.

Ecuador has both high richness and high endemism of species which are increasingly threatened by anthropic pressures, including roads. However, research evaluating the effects of roads remains scarce, making it difficult to develop mitigation plans. Here we present the first national assessment of wildlife mortality that allow us to 1) identify species and areas where mortality occurs due to collision with vehicles and 2) reveal knowledge gaps. We bring together data from systematic surveys and citizen science efforts in Ecuador to present a dataset with >5000 wildlife roadkill records from 454 species. Systematic surveys were reported by ten studies conducted in five out of the 24 Ecuadorian provinces. Collectively they revealed 282 species with mortality rates ranging from 0.008 to 95.56 ind./km/year. The highest rates were for the yellow warbler Setophaga petechia in Galápagos (95.56 ind./km/year), the cane toad Rhinella marina in Napo (16.91 ind./km/year), and the small ground-finch Geospiza fuliginosa in Galápagos (14.11 ind./km/year). Citizen science and other no systematic monitoring provided 1705 roadkill records representing all the 24 provinces of Ecuador and 299 species. The common opossum Didelphis marsupialis, the Andean white-eared opossum Didelphis pernigra, and the yellow warbler Setophaga petechia were more commonly reported (250, 104, and 81 individuals respectively). Across all sources, we found 15 species listed as Threatened and six as Data Deficient by the IUCN. We suggest stronger research efforts on areas where mortality of endemic or threatened species could be critical for populations, such as in Galápagos. This first assessment of wildlife mortality on Ecuadorian roads represents contributions from several sectors including academia, members of the public, and government underlining the value of wider engagement and collaboration. We hope these findings and the compiled dataset will guide sustainable planning of infrastructure in Ecuador and ultimately, contribute to reduce wildlife mortality on roads.

Conservation and management professionals often works across jurisdictional boundaries to identify broad ecological patterns. These collaborations help to protect populations whose distributions span political borders. One common limitation to multijurisdictional collaboration is consistency in data recording and reporting. This limitation can impact genetic research which relies on data about specific markers in an organism’s genome. Incomplete overlap of markers between separate studies can prevent direct comparisons. Standardized marker panels can reduce the impact this issue and provide a common starting place for new research. Genotyping-in-thousands (GTSeq) is one approach used to create standardized marker panels for non-model organisms. Here we describe the development, optimization, and early assessments of a new GTSeq panel for use with walleye (Sander vitreus) from the Great Lakes region of North America. High genome-coverage sequencing conducted using RAD-capture provided genotypes for thousands of single nucleotide polymorphisms (SNPs). From these markers, SNP and microhaplotype makers were chosen that were informative for genetic stock identification (GSI) and kinship analysis. The final GTSeq panel contained 500 markers, including 197 microhaplotypes and 303 SNPs. Leave-one-out GSI simulations indicated that GSI accuracy should be greater than 80% in most jurisdictions. The false-positive rates of parent-offspring and full-sibling kinship identification was found to be low. Finally, genotypes could be consistently scored among separate sequencing runs >94% of the time. Results indicate that the GTSeq panel we developed should perform well for multijurisdictional research throughout the Great Lakes region.

Aims Although minor climatic forest refuges were important as key areas for the long-term persistence of species and genetic diversity, and can again function as refuges during present and future climatic changes, they have received little attention in sub-Saharan Africa. The objectives in this paper were to assess the Togolese montane riparian forests as minor sub-Saharan forest refugia, examine the contribution of minor sub-Saharan forest refugia to the larger forest refugia using the Togolese montane riparian forests as a model, and discuss the implication of these results for biogeography and forest biodiversity conservation in sub-Saharan tropical Africa based on the floristic approach. Location Southwest Togo, West Africa, sub-Saharan Upper Guinea Region Methods Floristic data were collected across Togolese mountain riparian forests through an intensive botanical inventory using the survey approach (n=198; 50×10 m2). A comparative analysis was performed on the basis of floristic criteria and attributes related to climatic forest refuges. Results According to floristic attributes, the riparian forests of the subhumid Togolese mountains were important minor refuges for rainforests during Pleistocene warming. They share about 60% of their current species richness (868 species) with the large sub-Saharan forest refuges. Main conclusions The floristic data were similar to that of previous studies focusing on the forest refugia around the DG and elsewhere worldwide. However, they seem to be incompatible with the ideas that the DG forest flora may be essentially a relic of the early Holocene, when the geographical distribution of the Guinean-Congolian forest was maximum. Efforts to maintain maximum species diversity in sub-Saharan Africa should therefore pay particular attention to the conservation of minor forest refugia. This study asks important questions about the patterns of disjunction, which should be focused on in further studies. Keywords Tropical biodiversity, Forest refuges, Floristic approach, Dahomey Gap (DG), Togolese Mountain, Vegetation

The South American temperate forests have been subjected to drastic past topographic and climatic changes during the Pliocene – Pleistocene linked to Andean orogeny and glacial cycles. These changes are common drivers of genetic structure and adaptation process. Embothrium coccineum, a member of the Proteaceae family and an emblematic tree of the South American temperate forest with a distribution spanning 20° of latitude, has been strongly affected by these topographic and climatic changes. Previous studies have shown that the species presents a marked genetic structure with distinct ecotypes described; yet, little is known about their adaptive genetic responses. The main goal of this study was to investigate the effects of historical and contemporary landscape features affecting the genetic diversity and connectivity of E. coccineum throughout its natural distribution. Using more than 2000 SNPs, two genetic groups (North and Center-South) that have diverged some 2.8 million years ago were observed. The level of genetic structure was higher between populations within the North genetic group than within the Center-South group. We propose that these contrasting patterns of genetic structure are related to differences in pollinator’s assemblage and evolutionary histories between genetic groups. Moreover, we observed the existence a strong patter of isolation by environment in E. coccineum, suggesting that selection could have leaded to adaptive divergence among localities. We propose that, within the Chilean temperate forest, the patterns of genetic variation in E. coccineum reflect both a Quaternary phylogenetic imprint and the impact of selection to the strong environmental gradient.

1. Non-native ungulate grazing has negatively impacted native species across the globe, leading to massive loss of biodiversity and ecosystem services. Despite their pervasiveness, interactions between grazers and native species are not fully understood. We often observe declines in demography or survival of these native species, but lack understanding about the mechanisms underlying these declines. Physiological stress represents one mechanism of (mal)adaptation but data are sparse. 2. We investigated glucocorticoid levels in a native avian herbivore exposed to different intensities of non-native grazing in the cold desert Great Basin ecosystem, USA. We measured corticosterone, a glucocorticoid in birds, in feathers for a large sample (n = 280) of female Greater Sage-grouse (Centrocercus urophasianus) from three study areas in Northern Nevada and Southern Oregon with different grazing regimes of livestock and feral horses. 3. We found greater feral horse density was associated with higher corticosterone levels, and this effect was exacerbated by drought conditions. Livestock grazing produced similar results; however there was more model uncertainty about the livestock effect. Subsequent nesting success was lower with increased feather corticosterone, but corticosterone levels were not predictive of other vital rates. 4. Our results indicate a physiological response by sage-grouse to grazing pressure from non-native grazers. We found substantial among-individual variation in the strength of the response. These adverse effects were intensified during unfavorable weather events, highlighting the need to reevaluate management strategies in the face of climate change.

We sought to assess effect of plant environmental adaptation strategies and evolutionary history and quantify the contribution of ecological processes to community assembly by measuring functional traits and phylogenetic composition in local forest community. We selected 18 dominant tree species in a Lithocarpus glaber–Cyclobalanopsis glauca evergreen broad-leaved forest and measured nine leaf functional traits and phylogenetic data of each species. We analyzed the variation in traits and trade-off relationships, tested phylogenetic effects on leaf functional traits, explored the influence of phylogeny and environment on leaf functional traits, and distinguished the relative effects of spatial and environmental variables on functional traits and phylogenetic compositions. The results showed the following: (i) Leaf traits had moderate intraspecific variation, and significant interspecific variation existed especially among life forms. (ii) Significant phylogenetic signals were detected only in leaf thickness and leaf area. The correlations among traits both supported “the leaf economics spectrum” at the species and community levels, and the relationships significantly increased or only a little change after removing the influence of phylogeny, which showed a lack of consistency between the leaf functional trait patterns and phylogenetic patterns. We infer the coexistent species tended to adopt “realism” to adapt to their habitats. (iii) Soil total potassium and phosphorus content, altitude, aspect, and convexity were the most critical environmental factors affecting functional traits and phylogenetic composition. Total environmental and spatial variables explained 63.38% of the variation in functional trait composition and 47.96% of the variation in phylogenetic structures. Meanwhile, the contribution of pure spatial factors was significantly higher than that of the pure environment. Neutral- theory-based stochastic processes played dominant roles in driving community functional trait assembly, but niche-theory-based determinative processes such as environmental filtering had a stronger effect on shaping community phylogenetic structure at a fine scale.

Invasive predatory species are frequently observed to cause evolutionary responses in prey phenotypes, which in turn may translate into evolution of the prey’s population dynamics. Research has provided a link between rates of predation and the evolution of prey population growth in the lab, but studies from natural populations are rare. Here we tested for evolutionary changes in population dynamics parameters of zooplankton Daphnia pulicaria following invasion by the predator Bythotrephes longimanus into Lake Kegonsa, Wisconsin, US. We used a resurrection ecological approach, whereby clones from pre- and post-invasive periods were hatched from eggs obtained in sediment cores and were used in a 3-month growth experiment. Based on these data we estimated intrinsic population growth rates (r) and carrying capacities (K) using theta-logistic models. We found that post-invasion Daphnia maintained a higher r and K under these controlled, predation-free laboratory conditions. Thus, whereas previous experimental evolution studies of predator-prey interactions have demonstrated that genotypes that have evolved under predation have inferior competitive ability when the predator is absent, this was not the case for the Daphnia. Given that our study was conducted in a laboratory environment and the possibility for genotype-by-environment interactions, extrapolating these apparent counterintuitive results to the wild should be done with caution. However, barring such complications, we discuss how selection for reduced predator exposure, either temporally or spatially, may have led to the observed changes. This scenario suggests that complexities in ecological interactions represents a challenge when predicting the evolutionary responses of population dynamics to changes in predation pressure in natural systems.

Aim: Selection within natural communities has mainly been studied along large abiotic gradient, while the selection of individuals within population should occur locally under the play of biotic filter. To better seize the role of the latter, we postulated that the hierarchal nature of environmental selection and the multiple dimension of species trait space needed to be accounted for. Methods: We replicated a natural species richness gradient (from 2 to 16 species) within four contrasted wetlands (bog, fen, meadow, marsh), sampling functional traits from random individuals in communities. Developing a hierarchical distributional modelling, we analyzed the variation of the mean and dispersion of functional trait space at the ecosystem, community and species levels. Key results: We found that the abiotic differences between wetlands, which shaped a plant productivity gradient, selected species in regards with their leaf nutrient conservation / acquisition strategy. Within ecosystems, plant species richness was a strong driver of trait variation among both communities and species. Among communities, it shaped the selection of individuals according to their space occupation and leaf adaptations to light conditions. Demographically, some species used intraspecific trait variation to maintain equally dense populations, while others used it to become dominant in favorable conditions. Main Conclusions: Within ecosystems, variation in biotic conditions selects individuals along functional dimensions that are independent to the ones selected across ecosystems. Because intraspecific variations of light-related traits are related to demographic responses, it offers a way to link the study of species richness and eco-evolutionary dynamics.

• The carnivorous pitcher plant Sarracenia purpurea is native to North America, but has been introduced into Europe, where it is now widespread. We have little understanding of how this species functions in its non-native range. Such understanding will provide insight into S. purpurea ecology and support its use as a model system for investigating food webs. We measured pitcher morphology and prey capture by S. purpurea in Britain and Ireland. • Pitchers were removed from different plants at each of six bogs covering the species rage in the UK and Ireland (n = 10 pitchers per site). For each pitcher we counted and identified every prey item and took measurements of morphology. We also compiled prey capture data for existing studies in Europe and North America. • Prey capture characteristics varied between sites in the UK and Ireland. The amount of prey captured varied 2-fold between sites and was partially explained by differences in pitcher size; larger pitchers caught more prey. The primary prey was Formicidae, Diptera and Coleoptera. At the rank of order, prey composition varied between bogs, some contained mainly Formicidae, some mainly Diptera and some a mix. Plants were more specialised in prey capture at some bogs compared to others. There was no overall difference in prey capture (composition or degree of specialism) at the rank of order between plants in Europe compared to those in North America. At the rank of species, prey capture varied between populations even within the same order. • This study demonstrates a large amount of variability between sites in prey capture characteristics. This may reflect different site characteristics and/or plant strategies, will likely impact plant function, and may impact on the inquiline community. In terms of prey capture at the rank of order S. purpurea functions identically in its non-native range. This supports its use as a natural experiment for understanding food webs

During litter decomposition, part of the water-soluble components of the material dissolve (leach) rapidly into available water in the environment. Studies on litter decomposition that quantify mass-loss from litterbags integrate leaching and mineralization. In contrast to Lind et al. (2022), we believe that correcting for leaching in (terrestrial) litterbags studies such as the Tea Bag Index will result in more uncertainties than it resolves. This is mainly because leaching is a continuous process and because leached material can still be mineralized after leaching. Further, amount of material that potentially leaches from tea is comparable to other litter types. When correcting for leaching, it is key to be specific about the employed method, just like being specific about the study specific definition of decomposition.

In the Flora of China account (Pan et al. 2001) of Saxifraga mengtzeana Engl. & Irmsch., eight synonyms were attributed to it and one variant, recognised as S. epiphylla Gornall & Ohba, was split from it. This study re-evaluates the taxonomic status of some of the synonyms and of the segregated species in the light of new evidence presented here. Morphological and molecular evidence demonstrate that populations from north-western Yunnan and Sichuan are genetically differentiated from those in south-eastern Yunnan and neighbouring Guangxi. Observations in the field and in cultivation show that the peltate petiole attachment diagnostic of S. mengtzeana var. peltifolia Engl. & Irmsch. is developmentally labile. Similar observations combined with molecular data show that viviparous phenotypes, formerly treated as S. epiphylla, although largely under genetic control, occur sporadically throughout the ranges of both northern and southern taxa. Populations from north-western Yunnan and Sichuan are best recognised as S. geifolia Balf.f., whereas those from south-eastern Yunnan and neighbouring Guangxi are S. mengtzeana. Peltate-leaved variants of the latter are given no status and are relegated to complete synonymy. Viviparous phenotypes of S. mengtzeana are demoted to the rank of forma, as f. epiphylla; analogous phenotypes of S. geifolia are newly described as f. vivipara. Keywords China, Saxifragaceae, Phylogeny, Morphology, Taxonomy

Ecology is broad and relies on several complementary approaches to study the mechanisms driving the distribution and abundance of organisms and their interactions. One of them is citizen science, the co-production of scientific data and knowledge by non-professional scientists, in collaboration with or under the direction of professional scientists. Citizen science has bloomed in the scientific literature over the last decade and is being incrasingly popular. We used a bibliometric analysis to study whether associating the public to ecological research changes the making of ecology and the nature of questions it asks. We analysed keywords and abstracts of 41,105 articles published the last ten years, disentangling CitSci articles (those explicitly referring to citizen science) and non-CitSci articles. Keyword co-occurrence and thematic map analyses revealed that CitSci articles primarily focused on biodiversity and climate change in a more descriptive way than non-CitSci articles which were more likely to address theoretical questions in ecology. Roughly, citizen science in ecology addressed patterns, whereas non participatory research dug further into mechanisms. Biodiversity also appeared as a more central theme in the CitSci corpus, where it was more systematically associated with other keywords. Our study indicates that should the surge of citizen science approaches in ecological scientific literature have change the type of ecological inquiry, this thematic change is marginal. Still, we provide evidence that specific research questions individualized from ecological CitSci thus supporting the view that citizen science is becoming an independent field of investigation, and not only a peculiar methodological approach to ecological research.

Strong theory exists regarding population sex ratio evolution that predicts equal sex ratio (when parental investment is equal). In most animals, sex chromosomes determine the sex of offspring, and this fixed genotype for sex has made theory difficult to test since genotypic variance for the trait (sex) is lacking. It has long been argued that the genotype has become fixed in most animals due to the strong selection for equal sex ratios. The marine copepod Tigriopus californicus has no sex chromosomes, multiple genes affecting female brood sex ratio and a brood sex ratio that responds to selection. The species thus provides an opportune system in which to test established sex ratio theory. In this paper we further our exploration on the possibility that T. californicus has polygenic sex determination using an incomplete diallel crossing design and the “animal model” for analysis of the variance components of sex determination in the species. Our data confirm the presence of extra-binomial variance for sex, further confirming that sex is not determined through simple Mendelian trait inheritance. In addition, our crosses and backcrosses of isofemale lines selected for biased brood sex ratios show intermediate phenotypic means, as expected if sex is a threshold trait determined by an underlying “liability” trait controlled by many genes of small effects. Finally, we estimate heritability of an individual to be male or female on the observed binary scale as 0.09 (95% CI: 0.034-0.14). This work furthers our accumulating evidence for polygenic sex determination in T. californicus.

1.Overgrazing-induced grassland degradation has become a severe ecological problem worldwide. The diversity and composition of soil microbial communities are responsive to grazing disturbance. Yet, our understanding is limited with respect to the effects of grazing intensity on bacterial and fungal communities, especially in plant rhizosphere. 2.Using a long-term (15 years) grazing experiment, we evaluated the richness and composition of microbial communities in both rhizosphere and non-rhizosphere regions, under light, moderate, and heavy intensities of grazing, in a semiarid grassland. We also examined the relative roles of grazing-induced changes in some abiotic and biotic factors in affecting the richness and composition of microbial communities. 3.Our results showed that the responses of soil bacteria to grazing intensity differed greatly between rhizosphere and non-rhizosphere, and so did soil fungi. Specifically, the bacterial richness decreased markedly under moderate and heavy grazing in rhizosphere soil, whereas little impact on the fungal richness was observed. For microbial composition, with the increase in grazing intensity, an increase in dissimilarity among bacterial communities was observed, and this trend also held true for the fungal communities. Hierarchical partitioning analyses indicated that the bacterial composition in rhizosphere was primarily driven by root nitrogen and soil nitrogen concentrations while that in non-rhizosphere by soil available phosphorus. In addition, soil available phosphorus played an important role in affecting the fungal composition in both rhizosphere and non-rhizosphere regions. 4.Synthesis: This study provides direct experimental evidence that the richness and composition of microbial communities were severely altered by heavy grazing in a semiarid grassland. Thus, to restore the grazing-induced, degraded grasslands, we should pay more attention to the conservation of soil microbe in addition to vegetation recovery.