Summary: The hindrance of kernel development caused by waterlogging stress (WS) is the direct reason for the peanut yield reduction. Currently, the mechanism of kernel filling responding to WS remains unknown. The waterlogging-sensitive variety Huayu 39 was subjected to WS for 3 days after 7 days after gynophores touched the ground (DAG), and the key stage of WS affecting kernel filling is 14, 21, and 28 DAG. WS decreased the average filling rate and kernel dry weight. Therefore, transcriptome sequencing and widely-targeted metabolomic analysis were conducted on kernel to elucidate the mechanism for the decrease in average filling rate under WS, revealing that overexpression of the gene encoding tryptophan decarboxylase ( AhTDC), which caused the accumulation of melatonin, reduced kernel weight. The sucrose transformation rate was limited by the crosstalk between melatonin and ethylene, thereby reducing the kernel filling rate and hindering kernel development. Our results are crucial for formulating measures to alleviate the negative impact of WS on peanut yield and quality, providing a basis for exploring high-yield and high-quality cultivation, molecular-assisted breeding, and waterlogging prevention.

With continued global warming, plants are forecast to increasingly experience abiotic stress(es). Stomata on leaf surfaces are the gatekeepers to plant interiors, regulating gaseous exchanges that are crucial for both photosynthesis and outward water release. To optimise future productivity, accurate modelling of how stomata govern plant-environment interactions will be crucial. Here, we synergise optical and thermal imaging data to enhance transpiration modelling during water and/or nitrogen stress. By utilising hyperspectral data and partial least squares regression analysis of six plant traits and fluxes in wheat ( Triticum aestivum), we have developed a new spectral vegetation index; the combined nitrogen and drought index (CNDI), which can be used to detect both water stress and/or nitrogen deficiency. Upon full stomatal closure during drought, CNDI reduces as leaf biochemistry changes unfold, and during a combined stress experiment (drought and nitrogen deficiency), this is reflected in CNDI showing a strong relationship with leaf relative water content ( r2 = 0.70). By incorporating CNDI transformed with a sigmoid function into thermal-based transpiration modelling, we have increased the accuracy of modelling water fluxes during abiotic stress. If employed using future remote sensing technologies, our findings have the potential to markedly improve agricultural water usage and yields.

In plants, salicylic acid (SA) hydroxylation regulates SA homoeostasis, playing an essential role during plant development and response to pathogens. This reaction is catalyzed by SA hydroxylase enzymes, which hydroxylate SA producing 2,3- dihydroxybenzoic acid (2,3-DHBA) and/or 2,5-dihydroxybenzoic acid (2,5-DHBA). Several SA hydroxylases have been recently identified and characterized from different plant species; however, no such activity has been previously reported in maize. In this work, we describe the identification and characterization of a new SA hydroxylase in maize plants. This enzyme, with high sequence similarity to previously described SA hydroxylases from Arabidopsis and rice, converts SA into 2,5-DHBA; however, it shows different kinetics properties to those from previously characterized enzymes, and it also catalyzes the conversion of the flavonoid dihydroquercetin into quercetin in in vitro activity assays, suggesting that the maize enzyme may have different roles in vivo as those previously reported from other species. Despite this, ZmS5H can complement the resistance to pathogen and early senescence phenotypes of Arabidopsis s3h mutant plants. Finally, we characterized a maize mutant in the S5H gene ( s5hMu) that has altered growth, senescence and increased resistance against Colletotrichum graminicola infection, showing not only changes in SA and 2,5-DHBA but also variations in flavonol levels. Together, the results presented here provide evidence that SA hydroxylases in different plant species have evolved to show differences in catalytic properties that may be important to fine tune SA levels and other phenolic compounds such as flavonols to regulate different aspects of plant development and defense against pathogens.

Day respiration ( R d) is the metabolic, non-photorespiratory process by which illuminated leaves liberate CO 2 during photosynthesis. R d is used routinely in photosynthetic models and is thus critical for calculations. However, metabolic details associated with R d are poorly known, and this can be problematic to predict how R d changes with environmental conditions and relates to night respiration. It is often assumed that day respiratory CO 2 release just reflects ‘ordinary’ catabolism (glycolysis and Krebs ‘cycle’). Here, we carried out a pulse-chase experiment, whereby a 13CO 2 pulse in the light was followed by a chase period in darkness and then in the light. We took advantage of non-targeted, isotope-assisted metabolomics to determine non-‘ordinary’ metabolism, detect carbon remobilisation, and compare light and dark 13C utilisation. We found that several concurrent metabolic pathways (‘ordinary’ catabolism, oxidative pentose phosphates pathway, amino acid production, nucleotide biosynthesis, and secondary metabolism) took place in the light and participate in net CO 2 efflux associated with day respiration. Flux reconstruction from metabolomics leads to an underestimation of R d, further suggesting the contribution of a variety of CO 2-evolving processes. Also, the cornerstone of the Krebs ‘cycle’, citrate, is synthetised de novo from photosynthates mostly in darkness, and remobilised or synthesised from stored material in the light. Collectively, our data provides direct evidence that leaf day respiration ( i) involves several CO 2-producing reactions and ( ii) is fed by different carbon sources, including stored carbon disconnected from current photosynthates.

Wood serves crucial functions in plants, yet our understanding of the molecular regulation governing the composition, arrangement, and dimensions of its cells remains limited. The abrupt change in wood anatomy of lianas represents an excellent model to address the underlying mechanism, although consistent triggering factors for this process remain uncertain. In this study we examined how physical support attachment impacts the development of lianescent xylem anatomy in Bignonia magnifica (Bignoniaceae), employing a comprehensive approach integrating detailed anatomical analysis with gene expression profiling of cambium and differentiating xylem. Our findings demonstrate that attachment to physical supports triggers the formation of lianescent xylem, leading to increased vessel size, range of vessel sizes, broader vessel distribution, reduced fiber content, and higher potential specific water conductivity. These shifts in wood anatomy coincide with the downregulation of genes associated with cell division and cell wall biosynthesis, and the upregulation of transcription factors (TFs), defense/cell death, and hormone-responsive genes in the lianescent xylem. Based on our results, we propose a model delineating the molecular control underlying the formation of lianescent xylem, revealing how the increased complexity of lianescent anatomy reflects a more intricate transcriptional regulatory network encompassing a more diverse repertoire of TFs and hormone-responsive genes.

RNA editing is a tightly controlled process by which cytidines are converted to uridines in RNAs transcribed from the chloroplast and mitochondrial genomes in flowering plants. Multiple organellar RNA editing factor (MORF) complex was recently shown to be highly associated with C-to-U RNA editing activity of vascular plant editosome. However, mechanisms by which MORF9 mediates plastid RNA editing to control plant development in response to environmental cues remains obscure. In this study, we found that loss of MORF9 function impaired PSII efficiency, NDH activity, and carbohydrate production, rapidly promoted nuclear gene expression including sucrose transporter and sugar/energy responsive genes, and attenuated seedling development under sugar starvation conditions. Sugar repletion increased MORF9 and MORF2 expression in wild-type seedlings and promoted inefficiency of matK-706C, accD-794C, ndhD-383C and ndhF-290C RNA editing in morf9 mutant. This RNA editing inefficiency was associated with altered cell division in root meristem zone and nuclear gene expression in the morf9 mutant. Using gin2, snrk1, morf9 single and double mutants and overexpression of SnRK1 (KIN10) or HXK1 in the morf9 mutant background demonstrated that RNA editing efficiency of ndhD-383C and ndhF-290C sites was diminished in the gin2/morf9 double mutants, and editing efficiency of matK-706C, accD-794C, ndhD-383C and ndhF-290C sites was significantly diminished in the snrk1/morf9 double mutants. Overexpressing HXK1 or SnRK1 promoted RNA editing rate of matK, accD, ndhD, and ndhF in leaves of morf9 mutants，indicating that HXK1 might be required for MORF9 mediated ndhD-383C and ndhF-290C editing, while SnRK1 may only be required for MORF9 mediated ndhF-290C site editing. Collectively these findings suggest that sugar and/or its intermediary metabolites impair MORF9 mediated plastid RNA editing resulting in derangements of plant root development.

Carbonate-rich soils limit plant performance and crop production. Previously, local adaptation to carbonated soils was detected in wild Arabidopsis thaliana accessions, allowing the selection of two demes with contrasting phenotypes: A1 (carbonate tolerant, c+) and T6 (carbonate sensitive, c-). Here, A1 (c+) and T6 (c-) seedlings were grown hydroponically under control (pH 5.9) and bicarbonate conditions (10 mM NaHCO 3, pH 8.3) to obtain ionomic profiles and conduct transcriptomic analysis. In parallel, A1 (c+) and T6 (c-) parental lines and their progeny were cultivated on carbonated soil to evaluate fitness and segregation patterns. To understand the genetic architecture beyond the contrasted phenotypes a bulk segregant analysis sequencing (BSA-Seq) was performed. Transcriptomics revealed 208 root and 2503 leaf differentially expressed genes (DEGs) in A1 (c+) vs T6 (c-) comparison under bicarbonate stress, mainly involved in iron, nitrogen and carbon metabolism, hormones, and glycosylates biosynthesis. Based on A1 (c+) and T6 (c-) genome contrasts and BSA-Seq analysis, 69 genes were associated with carbonate tolerance. Comparative analysis of genomics and transcriptomics discovered a final set of 18 genes involved in bicarbonate stress responses that may have relevant roles in soil carbonate tolerance.

The hypersensitive response (HR) characterizes monogenic qualitative resistance traits in several pathosystems. Knowledge on its role in plant resistance to insects is so far limited to a few resistance ( R) gene-based resistances against piercing-sucking insects. Egg deposition by cabbage white butterflies ( Pieris spp.), pests of cabbage crops ( Brassica spp.), can trigger an HR-like cell death, which reduces egg survival and represents an effective plant resistance trait before feeding damage occurs. Here, we identified natural variation of HR-like to Pieris egg deposition in the black mustard ( B. nigra L.) and performed genetic mapping. HR-like segregated as a Mendelian trait and a single dominant locus on chromosome B3, named PEK ( P ieris e gg- k illing) was identified. In the ~50 kb region, eleven candidate genes, are located, including a cluster of genes encoding intracellular receptor proteins, TIR-NBS-LRR (TNLs). The PEK locus was found to be highly polymorphic between the parental accessions of our mapping populations and among B. nigra reference genomes. Our study is the first that identifies a single locus potentially involved in HR-like cell death induced by insect eggs. Further fine-mapping, comparative genomics and validation of the PEK locus will shed light on the role of TNL receptors in egg-induced HR-like cell death.

Climate change is often associated with increasing vapor pressure deficit (VPD) and changes in soil moisture (SM). While atmospheric and soil drying often co-occur, their differential effects on plant functioning and productivity remain uncertain. We investigated the divergent effects and underlying mechanisms of soil and atmospheric drought based on continuous, in situ measurements of branch gas exchange with automated chambers in a mature semiarid Aleppo pine forest. We investigated the response of control trees exposed to combined soil‒atmospheric drought (low SM, high VPD) during the rainless Mediterranean summer and that of trees experimentally unconstrained by soil dryness (high SM; using supplementary dry season water supply) but subjected to atmospheric drought (high VPD). During the seasonal dry period, branch conductance (g br), transpiration rate (E) and net photosynthesis (A net) decreased in low-SM trees but greatly increased in high-SM trees. The response of E and g br to the massive rise in VPD (to 7 kPa) was negative in low-SM trees and positive in high-SM trees. These observations were consistent with predictions based on a simple plant hydraulic model showing the importance of plant water potential in the g br and E response to VPD. These results demonstrate that avoiding drought on the supply side (soil moisture) and relying on plant hydraulic regulation constrains the effects of atmospheric drought (VPD) as a stressor on canopy gas exchange in mature pine trees under field conditions.

A stoma forms by a series of asymmetric divisions of a stomatal lineage precursor cell and the terminal division of a guard mother cell (GMC). The symmetric division of the GMC is rigidly restricted to only once through complex genetic regulation mechanisms. Here, we show that nitric oxide (NO) is involved in the regulation of the GMC terminal division. NO donor treatment results in the formation of single guard cells (SGCs). SGCs are also produced in plants that accumulate high NO, whereas clustered guard cells (GCs) appear in plants with low NO accumulation. NO treatment promotes the formation of SGCs in the stomatal cell signaling mutants sdd1, epf1 epf2, tmm1, erl2 and yda-1, reduces the cell number per stomatal cluster in the fama-1 and flp-1 myb88, but has no effect on stomatal cells of cdkb1;1 cyca2;2 cyca2;3 cyca2;4 quadruple mutants. Aminocyclopropane-1-carboxylic acid (ACC), a positive regulator of GMC division, reduces the NO-induced SGC formation. Further investigation found that NO inhibits ACC synthesis by repressing the expression of several ACC SYNTHASE ( ACS) genes, and in turn ACC represses NO accumulation by promoting the expression of HEMOGLOBIN 1 ( HB1) which encodes a NO scavenger. This work shows that NO plays a role in the regulation of the GMC terminal division by modulating ACC accumulation in the Arabidopsis cotyledon.

Examining how plant traits respond to and affect herbivory is a common approach to exploring plant-herbivore interactions and their impact on ecosystem processes and functioning. Despite plants being potentially exposed to both vertebrate and invertebrate herbivores simultaneously, fundamental differences in the ecology and evolution of these two herbivore guilds results in them often being studied separately. A synthesis of the literature is needed to understand the types of plant traits examined and their response to, and effect on (in terms of forage selection) vertebrate and invertebrate herbivory, and to identify associated knowledge gaps. Focusing on grassland systems and species, we found 139 articles that met our criteria: 40 invertebrate, 97 vertebrate and 2 focussed on both vertebrate and invertebrate herbivores. Invertebrate focussed research, research conducted in the Southern Hemisphere and research on non-domesticated herbivores was significantly underrepresented based on our search. Differences in study focus (trait response or trait affect), along with considerable differences in the types of traits examined, led to limited capacity for comparison between the two herbivore guilds. For both invertebrates and vertebrates however, plant traits related to growth, such as leaf nitrogen and photosynthetic capacity, were often positively associated with herbivory. Future research should prioritise understanding how invertebrates, and the combined impact of both invertebrates and vertebrates’ respond to and affect plant traits. This review can be used as a guide for future research to select plant traits which are commonly measured either within one, or across both guild/s, as to help improve comparability and the broader significance of results, while also extending research breadth and knowledge.

Hydathodes are usually associated with water exudation in plants. However, foliar water uptake (FWU) through the hydathodes has long been suspected in the leaf-succulent genus Crassula (Crassulaceae), a highly diverse group in southern Africa, and, to our knowledge, no empirical observations exist in the literature that unequivocally link FWU to hydathodes in this genus. FWU is expected to be particularly beneficial on the arid western side of southern Africa, where up to 50% of Crassula species occur and where periodically high air humidity leads to fog and/or dew formation. To investigate if FWU is operational in different Crassula species we used the apoplastic fluorescent tracer Lucifer Yellow in combination with different imaging techniques. Our images of dye-treated leaves confirm that hydathode-mediated FWU does indeed occur in Crassula and that it is probably widespread across the genus. Hydathodes in Crassula have been repurposed as moisture-harvesting structures, besides their more common purpose of guttation, an adaptation that has likely played an important role in the evolutionary history of the genus. Our observations suggest that FWU ability is independent of geographical distribution and its associated environmental conditions, as FWU is possible in species occurring within the fog belt of western southern Africa but also in those from the rather humid eastern side. We did not find a strong apparent link between FWU ability and leaf surface wettability. Instead, the hierarchically sculptured leaf surfaces of several Crassula species may facilitate FWU due to hydrophilic leaf surface microdomains, even in seemingly hydrophobic species. Overall, these results confirm the ecophysiological relevance of FWU in Crassula and reassert the importance of atmospheric humidity for some arid-adapted plant groups.

For many fruit crops, the colour of the fruit outwardly defines its eating quality. Fruit pigments provide reproductive advantage for the plant as well as providing protection against unfavourable environmental conditions and pathogens. For consumers these colours are considered attractive and provide many of the dietary benefits derived from fruits. In the majority of species, the main pigments are either carotenoids and/or anthocyanins. They are produced in the fruit as part of the ripening process, orchestrated by phytohormones and an ensuing transcriptional cascade, culminating in pigment biosynthesis. Whilst this is a controlled developmental process, the production of pigments is also attuned to environmental conditions such as light quantity and quality, availability of water and ambient temperature. If these factors intensify to stress levels, fruit tissues respond by increasing (or ceasing) pigment production. In many cases, if the stress is not severe, this can have a positive outcome for fruit quality. Here, we focus on the principal environmental factors (light, temperature and water) that can influence fruit colour.

Phloem sap transport, velocity and allocation have been proposed to play a role in physiological limitations of crop yield, along with photosynthetic activity or water use efficiency. Although there is clear evidence that carbon allocation to grains effectively drives yield in cereals like wheat (as reflected by the harvest index), the influence of phloem transport rate and velocity is less clear. Here, we took advantage of previously published data on yield, respiration, carbon isotope composition, nitrogen content and water consumption in winter wheat cultivars grown across several sites with or without irrigation, to express grain production in terms of phloem sucrose transport and compare with xylem water transport. Our results suggest that phloem sucrose transport rate follows the same relationship with phloem N transport regardless of irrigation conditions and cultivars, and seems to depend mostly on grain weight (i.e. mg per grain). When compared to xylem sap water movement, phloem sap velocity (in m s -1) was 5.8 to 7.7 times lower. Depending on the assumption made for phloem sap sucrose concentration, either phloem sap velocity or its proportionality coefficient to xylem velocity change little with environmental conditions. Taken as a whole, phloem transport from leaves to grains seems to be homeostatic within a narrow range of values and following relationships with other plant physiological parameters across cultivars and conditions. This suggests that phloem transport per se is not a limitation for yield in wheat but rather, is controlled to sustain grain filling.

Control of plant virus diseases largely depends on the induced plant defense achieved by the external application of synthetic chemical inducers with the ability to modify defense-signaling pathways. However, most of the molecular mechanisms underlying these chemical inducers remain unknown. Here, we developed a lentinan-loaded hydrogel with a core-shell structure and discovered how it protects plants from different virus infections. The hydrogel was synthesized by adding a chitosan shell on the surface of the polyanion sodium alginate-Ca 2+-lentinan (LNT) hydrogel (SL-gel) to form a CSL-gel. CSL-gels exhibit the capacity to prolong the stable release of lentinan and promote Ca 2+ release. Application of CSL-gels on the root of plants induces broad-spectrum resistance against TMV, TRV, PVX and TuMV). RNA-seq analysis identified that the calmodulin-like protein 19 gene ( NbCML19) is upregulated by the sustained release of Ca 2+ from the CSL-gel, and silencing and overexpression of NbCML19 alter the susceptibility and resistance of tobacco to TMV. Our findings provide evidence that this novel and synthetic CSL-gel strongly inhibits the infection of plant viruses by the sustainable release of LNT and Ca 2+. This study uncovers a novel mode of action by which CSL-gels trigger NbCML19 expression through the stable and sustained release of Ca 2+.

In cellular circumstances where carbohydrates are scarce, plants can use alternative substrates for cellular energetic maintenance. In plants, the main protein reserve is present in the chloroplast, which contains most of the total leaf proteins and represents a rich source of nitrogen and amino acids. Autophagy plays a key role in chloroplast breakdown, a well-recognized symptom of both natural and stress-induced plant senescence. Remarkably, an autophagic-independent route of chloroplast degradation associated with Chloroplast Vesiculation (CV) gene was recently demonstrated. During extended darkness, CV is highly induced in the absence of autophagy, contributing to the early senescence phenotype of atg mutants. To further investigate the role of CV under dark-induced senescence conditions, mutants with low expression of CV ( amircv) and double mutants amircv1xatg5 were characterized. Following darkness treatment, no aberrant phenotypes were observed in amircv single mutants; however, amircv1xatg5 double mutants displayed early senescence and enhanced dismantling of chloroplast and membrane structures under these conditions. Metabolic characterization revealed that the functional lack of both CV and autophagy leads to higher impairment of amino acid release and differential organic acid accumulation during starvation conditions. The data obtained are discussed in the context of the role of CV and autophagy, both in terms of cellular metabolism and the regulation of chloroplast degradation.

The 18O enrichment (Δ 18O) of leaf water affects the Δ 18O of photosynthetic products such as sucrose, generating an isotopic archive of plant function and past climate. However, uncertainty remains regarding how leaf water compartmentation between photosynthetic and non-photosynthetic tissue affects the relationship between Δ 18O of bulk leaf water (Δ 18O LW) and leaf sucrose (Δ 18O Sucrose). We grew Lolium perenne (a C 3 grass) in mesocosm-scale, replicated experiments with daytime relative humidity (RH 50 or 75%) and CO 2 level (200, 400 or 800 μmol mol -1) as factors, and determined Δ 18O LW, Δ 18O Sucrose and morpho-physiological leaf parameters, including transpiration ( E leaf), stomatal conductance ( g s) and mesophyll conductance to CO 2 ( g m). The Δ 18O of photosynthetic medium water (Δ 18O SSW) was estimated from Δ 18O Sucrose and the equilibrium fractionation between water and carbonyl groups (ε bio). Δ 18O SSW was well predicted by theoretical estimates of leaf water at the evaporative site (Δ 18O e) with adjustments that correlated with gas exchange parameters ( g s or total conductance to CO 2). Isotopic mass balance and published work indicated that non-photosynthetic tissue water was a large fraction (~0.53) of bulk leaf water. Δ 18O LW was a poor proxy for Δ 18O Sucrose, mainly due to opposite Δ 18O responses of non-photosynthetic tissue water (Δ 18O non-SSW) relative to Δ 18O SSW, driven by atmospheric conditions.

A key to achieve the goals put forward in the UN's 2030 Agenda for Sustainable Development, it will need transformative change to our agrifood systems. We must mount to the global challenge to achieve food security in a sustainable manner in the context of climate change, population growth, urbanization, and depletion of natural resources. Rice is one of the major staple cereal crops that has contributed, is contributing, and will still contribute to the global food security. To date, rice yield has held pace with increasing demands, due to advances in both fundamental and biological studies, as well as genomic and molecular breeding practices. However, future rice production depends largely on the planting of resilient cultivars that can acclimate and adapt to changing environmental conditions. This Special Issue highlight with reviews and original research articles the exciting and growing field of rice-environment interactions that could benefit future rice breeding. We also outline open questions and propose future directions of 2050 rice research, calling for more attentions to develop environment resilient rice especially hybrid rice, upland rice and perennial rice.