Species and metabolic pathways involved in bioremediation of Vietnamese
soil contaminated with Agent Orange. Bordetella petrii emerges as
a key player in degradation of 2,4 dichlorophenoxyacetic acid
Abstract
Four bacterial strains were isolated from enrichment cultures inoculated
with soil from Bien Hoa military base in Vietnam contaminated with the
herbicides 2,4-dichlorophenoxyacetate (2,4-D) and
2,4,5-trichlorophenoxyacetate (2,4,5-T). They were classified as
Pseudomonas aeruginosa BT1 2.2, Sphingomonas
histidinilytica BT1 5.2, Bordetella petrii BT1 9.2, and
Achromobacter xylosoxidans BT1 10.2, respectively. All 4 of them
were able to degrade 2,4-D and 2,4,5-T during cultivation, but only the
last 3 species used them as sole sources of carbon and free energy. We
obtained a comprehensive insight into their degradation pathways by
genomic analysis of these strains. A gene cluster with tfdCDEF
genes was found in A. xylosoxidans BT1 10.2. The gene
organization along with the amino acid sequences of the gene products
are almost identical to those in B. petrii DSM12804. The B.
petrii BT1 9.2 strain that we isolated has a full complement of the
tfdABCDEF genes. Surprisingly, the gene organization along with
the amino acid sequences of the gene products are virtually identical to
those of Cupriavidus pinatubonensis JMP134, referred to as type I
tfd genes, and clearly different from those of A.
xylosoxidans and B. petrii DSM12804. Altogether, our enrichment
approach has successfully resulted in boosting 3 different types of
proteobacterial species that are equipped with metabolic pathways to use
the herbicides as sole sources of carbon and free energy. We hypothesize
that some of the corresponding genetic potential may have been recruited
in recent mating events between these species and other members of the
β- and γ-proteobacteria.