Abstract
Passive collection is an emerging sampling method for environmental DNA
(eDNA) in aquatic systems. Passive eDNA collection is inexpensive,
efficient, and requires minimal equipment, making it suited to high
density sampling and remote deployment. Here, we compare the
effectiveness of nine membrane materials for passively collecting fish
eDNA from a 3 million litre marine mesocosm. We submerged materials
(cellulose, cellulose with 1% and 3% chitosan, cellulose overlayed
with electrospun nanofibers and 1% chitosan, cotton fibres, hemp fibres
and sponge with either zeolite or active carbon) for intervals between
five and 1080 minutes. We show that for most materials, with as little
as five minutes submersion, mitochondrial fish eDNA measured with qPCR,
and fish species richness measured with metabarcoding, was comparable to
that collected by conventional filtering. Furthermore, PCR template DNA
concentrations and species richness were generally not improved
significantly by longer submersion. Species richness detected for all
materials ranged between 11 to 37 species, with a median of 27, which
was comparable to the range for filtered eDNA (19-32). Using scanning
electron microscopy, we visualised biological matter adhered to the
surface of materials, rather than entrapped, with images also revealing
a diversity in size and structure of putative eDNA particles.
Environmental DNA can be collected rapidly from seawater with a passive
approach and using a variety of materials. This will suit cost and
time-sensitive biological surveys, and where access to equipment is
limited.