Magnetic holes have been studied for decades, but their three-dimensional structure has not been thoroughly investigated until now. We have identified solar wind magnetic holes observed simultaneously by the four Cluster spacecraft. By transforming the observations into a local coordinate system and identifying a principal axis, we fit the results to a three-dimensional Gaussian model to estimate their scales. We present four events that highlight the various aspects of this method, emphasizing the critical role of coordinate system selection in the analysis. The principal axis of the holes varied, and in three out of four cases, were not aligned with the magnetic field, instead forming angles between 50 and 80 degrees, suggesting that magnetic holes are not necessarily oriented along the magnetic field. Finally, our analysis reveals that the scale of the holes along one direction is significantly longer than along the other two, suggesting an elongated ellipsoid as a typical shape for their morphology.