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L452M in spike glycoprotein indicative of zoonotic links of SARS-CoV-2 XBC.1
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  • Krishna Khairnar,
  • Shefali Rahangdale,
  • Siddharth Singh Tomar,
  • Ekant Tamboli,
  • Sandhra Ravikumar,
  • Lekha Salsekar
Krishna Khairnar
CSIR-National Environmental Engineering Research Institute

Corresponding Author:[email protected]

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Shefali Rahangdale
CSIR-National Environmental Engineering Research Institute
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Siddharth Singh Tomar
CSIR-National Environmental Engineering Research Institute
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Ekant Tamboli
CSIR-National Environmental Engineering Research Institute
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Sandhra Ravikumar
CSIR-National Environmental Engineering Research Institute
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Lekha Salsekar
CSIR-National Environmental Engineering Research Institute
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Abstract

Mutations at positions 452 and 486 of the spike glycoprotein receptor binding domain (RBD) in the SARS-CoV-2 XBC.1 variant were analysed from the viewpoint of change in hydrophobicity and amino acid charge. A decrease in hydrophobicity due to mutations at positions 452 and 486 in the spike glycoprotein was observed, which might affect the infectivity of the XBC.1 variant. L452M and F486P improve the hACE2-RBD binding affinity, which might negatively impact the efficacy of vaccines against SARS-CoV-2, primarily based on spike glycoprotein. Notably, the mutation L452M in XBC.1 also indicates its probable zoonotic links.