This study proposes a fault estimation and tolerant anti-disturbance switching control (ADSC) approach for the switched systems subject to the system fault and multiple disturbances. The fault dose not required to have a model.The disturbances contain the modeled unmeasurable part and the unmodeled measurable part. First, a composite switching estimator is constructed to simultaneously estimate the unavailable system state, fault and modeled disturbance. Then, by means of the estimator, a switching controller is developed to tolerant the fault and complement the modeled disturbance. Further, under the dwell time relevant switching signals, criteria are established to ensure the fault estimation performance and robustness property for the switched systems. Finally, via implementing the presented fault estimation and tolerant ADSC scheme on a switched circuit system to regulate the charge and flux, the reasonability of the established result is verified.