Seasonspotter

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Hi Reddit, We’re Margaret Kosmala and Koen Hufkens at Harvard University and Josh Gray at Boston University. We’re part of a research group that has been putting automated cameras on weather towers and other elevated platforms to study the the seasonal timing of changes in plants, shrubs, and trees – called ‘phenology’. Because this timing of when plants leaf, flower, and fruit is very sensitive to changes in weather, plant phenology alerts us to changing climate patterns. Our network of about 300 cameras (’PhenoCams’) take pictures of vegetated landscapes every half hour, every day, all year round. (That’s a lot of pictures!) With the data from these images we can figure the relationships between plant phenology and local weather and then predict the effects of future climate using models. We also use images from satellites to broaden the extent of our analyses beyond the 300 specific sites where we have cameras. And we use citizen science to help turn our PhenoCam images into usable data, through our Season Spotter project. Anyone can go to Season Spotter and answer a few short questions about an image to help us better interpret the image. Right now we are running a “spring challenge” to classify 9,500 images of springtime. With the results, we will be able to pinpoint the first and last days of spring, which will help calibrate climate change models. UPDATE: We’re done with our Season Spotter spring images, thanks! Since it’s fall in half the world, we’ve loaded up our fall images. We have another 9,700 of those to classify, as well. We’ll be back at 1 pm EDT (10 am PDT, 6 pm UTC) to answer your questions; we’re looking forward to talking to you about climate change, plants, and public participation in science! UPDATE 1 pm Eastern: We’re now answering questions! UPDATE 3 pm Eastern: Josh has to leave for a meeting. But Koen and Margaret will stick around and answer some more questions. Ask away if you have more of them. UPDATE 5 pm Eastern: Koen and I are done for the day, and we’ve had a lot of fun. Thank you all for so many insightful and interesting questions! We’ll try to get to more of the ones we missed tomorrow.

Michael_F_Wells

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Hi Reddit, My name is Michael F. Wells and I am originally from Columbus, OH. Ever since I read the book “The Value of Believing in Yourself: The Story of Louis Pasteur” when I was five-years old, I wanted to be a scientist who studied human disease. I recently completed my PhD at Duke University and am now conducting research at the Broad Institute and Harvard University in Cambridge, MA. My work focuses on creating models of psychiatric disease to unravel the mysteries encasing these complicated and debilitating disorders so that one day we may be able to produce safe and effective treatments. I spent the past 6 years in the laboratory of Dr. Guoping Feng at the Massachusetts Institute of Technology where I was involved in projects focusing on animal models of obsessive-compulsive disorder (OCD), autism spectrum disorder (ASD), schizophrenia (SCZ), and attention-deficit/hyperactivity disorder (ADHD). I now work in the laboratory of Dr. Kevin Eggan where I am using human stem cell-derived brain cells to study some of these same diseases. This past week, my work focusing on a new mouse model of ADHD was published in Nature (http://www.nature.com/nature/journal/vaop/ncurrent/full/nature17427.html). In this study, my amazing team from the Feng lab and the Michael Halassa lab (NYU) removed a gene known as Ptchd1 from the mouse genome (known as the Ptchd1 knockout mouse). We picked this gene because it has been found to be mutated in approximately 1% of patients with ASD and intellectual disability (ID). These mice displayed several abnormal behaviors including cognitive deficits, grip weakness, disrupted sleep, hyperactivity, and attention deficit. Importantly, we found that Ptchd1 is expressed in a part of the brain known as the thalamic reticular nucleus (TRN), which acts as an “information filter” in the brain. The results of our investigation suggest that this filter is allowing too much information to pass through to other brain regions in this mouse. Importantly, we were able to show that these TRN defects were contributing to the hyperactivity and attention-deficit behaviors, both of which are hallmarks of ADHD. Finally, we successfully fixed these ADHD-like behaviors in mice using a drug known as 1-EBIO, which targets an ion channel that we found to be dysfunctional in Ptchd1 knockout mouse TRN cells. It is important to note that 1-EBIO is not meant for use in humans, so much more work needs to be done before we can translate these findings to a safe and effective treatment for humans. Are mice valid models for human conditions? How do you assess these human-like behaviors in mice? What is the future of disease modeling? I will start answering these questions and more around 1pm (10 am PST, 6 pm UTC) and will stick around until you get tired of listening to me. Edit: OK I’m starting early because I am the captain now. Let’s do this. Edit #2 (1:47pm): I had some technical issues. They are resolved now so I am back. Edit #3 (2:44pm): I am staying until you kick me out. If you have to leave, however, and want to continue the discussion, you can follow me on Twitter @mfwells5 Also, my collaborators and I have set up a Gmail account to answer Ptchd1/TRN questions: [email protected] Final Edit (6:50pm): Thanks everyone for your amazing questions. I answered as many as I could before my stem cells started crying for their daily feeding. Feel free to reach out to me if you have any additional questions. It was fun–see ya!

Jonathan_Sakkos

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Hi Reddit! I’m Jonathan Sakkos, a mechanical engineering PhD candidate. I’m a member of the Bioencapsulation Laboratory in the Department of Mechanical Engineering and the BioTechnology Institute at the University of Minnesota in Minneapolis, Minnesota. I study bioencapsulation (physical confinement) of bacteria within porous silica gels for cleaning pollutants from water in collaboration with Professor Wackett in the Department of Biochemistry, Molecular Biology, and Biophysics. Bacteria have a wonderful ability to eat many harmful chemicals (especially hydrocarbons) found in water as a result of millions of years of evolution. I study the interface between the biology and the material as well as the diffusion of chemicals within the material in order to harness the unique abilities of bacteria in an efficient manner. We recently published a paper in Biotechnology and Bioengineering entitled “Engineering of a silica encapsulation platform for hydrocarbon degradation using Pseudomonas sp. NCIB 9816-4” in which we encapsulated a bacterium which is known to biodegrade (eat) over 100 pollutants and optimized the material to be as strong and porous as possible while keeping our bacteria happy . Our lab has also studied the biodegradation of atrazine, a very popular herbicide, by encapsulated bacteria. I’ll be here at 1 pm ET (10 am PT, 6 pm UT) to answer your questions. Ask me anything about bioencapsulation and what bacteria can do for you! 3 pm CDT: I have some lab work to do, but I’ll check back later this afternoon. Thanks for all of the thoughtful questions. 6 pm CDT: I’m signing off. This has been fun and thanks for the great questions!

Anthony_Aguirre

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I’m a cosmologist specializing in the very, very, very early Universe (cosmological inflation), with interests in black holes and gravity, the foundations of quantum mechanics, the arrow of time, and other fun-and-bewildering things. My favorite subjects are those that sound somewhat crazy, but arise from following our current best physical theories where they lead. The inflationary “multiverse” is a good example, and my recent research mostly concerns observable signatures of other bubble “universes” crashing into ours. In 2006, Max Tegmark and I created the Foundational Questions Institute to support research worldwide on the foundations of physics and cosmology where the questions are so risky, or “big” that conventional funding is hard to come by. If you enjoy thinking about the stuff on this thread, there’s lots of good material at the FQXi community site. Last year, I joined Max and several others in founding the Future of Life Institute, which seeks to minimize the risk/reward ratio in world-changing emerging technologies such as AI and Genetic engineering. Like other universes and black holes, when you talk a lot about these technologies they can sound crazy. But they’re coming! Most recently, with astrophysicist Greg Laughlin, I started the Metaculus project, an effort to create high-quality crowdsourced predictions about scientific and technological impact and breakthroughs, to help us understand what science and technology we should keep our eyes on. (Looking for more users – if you like to predict or think about the future, check it out!) Edit: 5 PST, periodically checking in to answer a few more