The low sensitivity of conventional single photon emission computed tomography (SPECT) presents challenges for ultra-low activity imaging, such as targeted alpha therapy (TAT) imaging. Our previous work showed that collimatorless imaging can achieve remarkable sensitivity but suffers from deteriorated resolution and inaccurate reconstructions, even with advanced reconstruction algorithms. To address these limitations, in this study, we design the dual-layer collimatorless SPECT systems specifically for fast or ultra-low activity imaging. These dual-layer systems combine collimatorless imaging with collimated acquisition using slit or slat collimators: the inner layer maximizes sensitivity with collimatorless imaging, while the outer layer provides additional spatial information through collimated imaging. Unlike general-purpose SPECT systems, these are tailored to significantly improve sensitivity while maintaining satisfactory spatial resolution and accurate reconstruction for fast or ultra-low activity imaging. In this study, our primary focus is on small animal imaging, particularly preclinical TAT imaging using 225 Ac as an exemplar for ultra-low activity imaging. We evaluate the performance of these dual-layer systems through extensive Monte Carlo simulations and reconstructions with various phantoms. The results show that relying solely on collimatorless imaging from the inner layer or collimated imaging from the outer layer leads to inaccuracies and suboptimal reconstructions in ultra-low activity imaging. The combined imaging from both layers enhances sensitivity, spatial resolution, and overall image quality. The proposed dual-layer collimatorless SPECT systems achieve a sensitivity higher than 29% for 218 keV gamma rays and an image resolution of about 5 mm, making them promising and suitable for ultra-low activity imaging.