Rooting depth is an ecosystem trait that determines the extent of soil development and carbon cycling. Recent hypotheses propose that human-induced changes to Earth’s biogeochemical cycles propagate deeply due to rooting depth changes from agricultural and climate-induced land cover changes. Yet, the lack of a global-scale quantification of rooting depth responses to human activity limits knowledge of hydrosphere-atmosphere-lithosphere feedbacks in the Anthropocene. Here we use land cover datasets to demonstrate that global rooting depths have become shallower in the Anthropocene, and are likely to become yet shallower this century. Specifically, globally averaged depths above which 99% of root biomass occurs (D99) are 8.7%, or 16 cm, shallower relative to those for potential vegetation. This net shallowing results from agricultural expansion truncating D99 by 82 cm, and woody encroachment linked to anthropogenic climate change extending D99 by 65 cm. Projected land cover scenarios in 2100 suggest further D99 shallowing of 63 to 72 cm, exceeding that experienced to date and suggesting that the pace of root shallowing will quicken in the coming century. Losses of Earth’s deepest roots—soil-forming agents—suggest unanticipated changes in fluxes of water, solutes, and carbon. Our work constrains rooting depth distributions for global models, allowing the land modeling community to explore cascading effects of rooting depth changes on water, carbon, and energy dynamics, and can guide design of field-based efforts to quantify deep anthropogenic influences. Understanding human influence on biota’s reach into Earth’s subsurface will improve predictions of interactive functioning of the biosphere, lithosphere, and hydrosphere.

Rooting depth is an ecosystem trait that determines the extent of soil development and carbon (C) and water cycling. Recent hypotheses propose that human-induced changes to Earth’s biogeochemical cycles propagate deeply due to rooting depth changes from agricultural and climate-induced land cover changes. Yet, the lack of a global-scale quantification of rooting depth responses to human activity limits knowledge of hydrosphere-atmosphere-lithosphere feedbacks in the Anthropocene. Here we use land cover datasets to demonstrate that root depth distributions are changing globally as a consequence of agricultural expansion truncating depths above which 99% of root biomass occurs (D99) by ~60 cm, and woody encroachment linked to anthropogenic climate change extending D99 in other regions by ~38 cm. The net result of these two opposing drivers is a global reduction of D99 by 5%, or ~8 cm, representing a loss of ~11,600 km3 of rooted volume. Projected land cover scenarios in 2100 suggest additional future D99 shallowing of up to 30 cm, generating further losses of rooted volume of ~43,500 km3, values exceeding root losses experienced to date and suggesting that the pace of root shallowing will quicken in the coming century. Losses of Earth’s deepest roots — soil-forming agents — suggest unanticipated changes in fluxes of water, solutes, and C. Two important messages emerge from our analyses: dynamic, human-modified root distributions should be incorporated into earth systems models, and a significant gap in deep root research inhibits accurate projections of future root distributions and their biogeochemical consequences.

Most terrestrial nutrient sources are hypothesized to shift in dominance from mineral- to organic matter (OM)-derived over millennia. We investigated how overlaying this hypothesis with plant rooting dynamics that can feedback to soil development offers insight into ecosystem functioning. To test the hypothesis that the nutritional importance of OM as mineral weathering proceeds is mediated by rooting system nutrient economies that vary with vegetation development, we paired litterfall decay experiments with soil mineralogical data from diverse forests across the Critical Zone (CZ) Observatory Network. We demonstrate that sources of phosphorus shift from OM-bound stocks to minerals as the rooting zone expands during the transition from mid to late stages of forest growth. Root-driven, plant-soil feedbacks thus can prompt inconsistencies with soil development models that posit a unidirectional transition from mineral to organic nutrient dominance, and illuminate how forest growth and land use influence nutrient bioavailability in Earth’s CZ.