To alleviate the ill-posed of the inverse problem in Fluorescent molecular tomography (FMT), many regularization methods based on L 2 or L 1 norm have been proposed. Whereas, the quality of regularization parameters affect the performance of the reconstruction algorithm. Some classical parameter selection strategies usually need initialization of parameter range and high computing costs, which is not universal in the practical application of FMT. In this paper, an universally applicable adaptive parameter selection method based on maximizing the probability of data (MPD) strategy was proposed. This strategy used maximum a posteriori (MAP) estimation and maximum likelihood (ML) estimation to establish a regularization parameters model. The stable optimal regularization parameters can be determined by multiple iterative estimates. Numerical simulations and in vivo experiments show that MPD strategy can obtain stable regularization parameters for both regularization algorithms based on L 2 or L 1 norm and achieve good reconstruction performance.