Free space optical (FSO) communication has established a reputation for itself capable of delivering high-speed data services over long distances without exhausting radio frequency (RF) resources. FSO communication can be considered in different network scenarios, including inter-satellite/deep-space links, ground-station/vehicles, satellite/aerial links, and terrestrial links. It is expected to be one of the key enabling technologies for the next generation of 6G wireless networks. Nevertheless, despite the great potential of FSO communications, its performance suffers from various limitations and challenges: atmospheric turbulence, clouds, weather conditions, and pointing misalignment. The error-control solutions, including physical layer (PHY) and link-layer methods, aim to mitigate the transmission errors caused by such adverse issues. While the existing surveys on error-control solutions in FSO systems primarily focussed on the PHY methods, we instead provide a review of link-layer solutions. In particular, we conduct an extensive literature survey of state-of-the-art retransmission protocols, both automatic repeat request (ARQ) and hybrid ARQ (HARQ), for various FSO communication scenarios, including point-to-point terrestrial, cooperative, multi-hop relaying, hybrid FSO/RF, satellite/aerial, and deep-space systems. Furthermore, we provide a survey of recent literature and insightful discussion on the cross-layer design frameworks related to link-layer retransmission protocols in FSO communication networks. Finally, the lessons learned, design guidelines, related open issues, and future research directions are exposed.